Populus trichocarpa (black cottonwood): 7462871
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Entry
7462871 CDS
T01077
Name
(RefSeq) transcription factor SPATULA isoform X1
KO
K28361
transcription factor SPT/ALC
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
7462871
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pop03000
]
7462871
Transcription factors [BR:
pop03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
7462871
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GFIT
Motif
Pfam:
HLH
bHLH_SAC51
Dbl7
CDK2AP
bHLH_LHW
Ribosomal_S20p
CENPU
Motif
Other DBs
NCBI-GeneID:
7462871
NCBI-ProteinID:
XP_024450412
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All DBs
Position
2:9466165..9471398
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AA seq
345 aa
AA seq
DB search
MADLYGPARSPATEPEEISTFLQQFLGNNSSSSSSKFIHHALSTPVETGSAAVEFLDCHL
FGRSETECGAGAGNSGVNLSDPGGYYVKGGVDNAVSSGISKRRGASVEDDLGDFSCDSEK
GAEVAEVQANAVRPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASM
LDEAIEYLKQLQLQVQMLTMRNGLSLHPMCLPGALQPMQPPLSGMSFDEGNGLLTTDTLT
GIFSANEESSVQTALNLPSQCTVSNQPIAIPSGTNITSSETSFGFEPLIHVNHAPFNLCT
SSKEICREATPQAQIEMNQTVKTSPSGLQSQQGTYEDGKACKRTR
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atggcggatctgtacggaccggcacggtcaccggccactgagccagaagagatctctact
ttcctccaacagttcctcggcaacaactcttcttcctcctcttctaaattcatccatcac
gctctctctacgccggtggagactggctccgccgccgtggaatttttggattgccacctg
tttggacggtcggagacggagtgcggagccggtgctggaaactccggtgtcaatctctct
gatcccggtggttattatgttaaaggaggcgtggataatgcggtctcttcaggtatttca
aagagaaggggagcctccgtggaggatgatctaggtgattttagctgcgatagcgagaag
ggggcggaggtggctgaggtgcaagctaatgcagtgcggccgcgaagttcatcgaagagg
agtagagctgcggaggttcataatttatctgaaaagaggaggaggagtaggatcaatgag
aaaatgaaagccttacagaatttaattcctaattctaataagacggataaggcttcgatg
ctggatgaggccattgaatacttgaagcagcttcagcttcaagtgcagatgttaacaatg
agaaatggattgagtttgcacccgatgtgcttaccaggagcactacagccaatgcagccg
cccttgtcaggaatgagctttgatgaaggaaatgggttgttaactacagacacattaaca
ggcatattttctgcaaatgaagaaagctcggtgcaaactgctcttaatcttccaagccag
tgcacggtctcaaatcaaccaattgctattccttcagggacaaacattacctcatcagaa
actagctttggttttgaaccactgatccatgtcaaccatgcacccttcaatctgtgcaca
tcttcaaaggaaatatgcagggaagcaacaccacaggcacaaatagagatgaatcaaact
gtgaagacttctccatccggactgcagagtcagcagggaacctatgaggacggaaaagcg
tgtaaacgaaccaggtga
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