Populus trichocarpa (black cottonwood): 7462984
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Entry
7462984 CDS
T01077
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
pop03015
mRNA surveillance pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7462984
09122 Translation
03013 Nucleocytoplasmic transport
7462984
03015 mRNA surveillance pathway
7462984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7462984
03041 Spliceosome [BR:
pop03041
]
7462984
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
7462984
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
7462984
Spliceosome [BR:
pop03041
]
Complex C
Other components
EJC/TREX
7462984
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
7462984
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
YihI
Motif
Other DBs
NCBI-GeneID:
7462984
NCBI-ProteinID:
XP_002324856
UniProt:
B9IKW5
LinkDB
All DBs
Position
18:2111630..2116817
Genome browser
AA seq
428 aa
AA seq
DB search
MGETRDNDAYEEELLDYEEEDDKAPDSVGAKVNGEAVKKGYVGIHSSGFRDFLLKPELLR
SIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTSGQVIALV
LCHTRELAYQICHEFERFSTYLPDTKVAVFYGGVNVKTHKDLLKNECPHVVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaacaagagacaacgatgcttacgaggaggagcttctcgactacgaagaagaa
gatgacaaagcacctgactccgtcggagctaaagttaacggcgaagccgttaagaaggga
tatgttggaattcacagttcgggattcagagacttccttttgaagccagagcttcttcgg
tccattgttgactcgggttttgagcatccttctgaagtgcaacatgagtgtattccccaa
gccatcttgggaatggatgtcatctgccaagctaaatctggaatgggaaagactgctgtt
tttgttctgtctactcttcagcaaattgagcctacctctggacaagttattgcccttgtt
ctatgtcacactagagagttggcataccagatctgtcacgagtttgagaggttcagtact
tacttgcccgatacaaaggttgctgttttctatggtggtgtcaatgtcaaaactcacaaa
gatctactgaaaaatgaatgccctcatgttgttgttggaactcctggaagaatcctggca
ctggctagagataaagacctttctttgaagaatgtcaggcattttatccttgatgaatgt
gacaaaatgctggaatcactcgacatgaggagagatgttcaggagatcttcaaattgact
cctcatgataagcaagttatgatgttttctgcaacactcagcaaagaaatccgcccagtt
tgcaaaaaattcatgcaagatccaatggaaatttacgtcgatgatgaagccaagttgacc
ctccatggtcttgtacagcactacatcaaactgactgagctggagaaaaatcggaagttg
aacgatcttcttgatgcattggacttcaatcaagttgttatctttgttaaaagtgtgagc
agagcagctgagctgaacaagttgctcgtggagtgtaatttcccctctatttgcatccat
tctggcatgtcacaggaagaaaggttgatgcgctacaagggtttcaaggagggtcataaa
aggattcttgttgccactgatttggttggcaggggtattgatattgaacgtgtcaacatt
gttattaactatgacatgccagactctgctgacacttacttgcacagggttggtagagct
ggtaggtttggcacaaagggccttgcaattacctttgtatcatcagcttccgactctgat
gttctcaaccaggttcaagagaggtttgaggtggatataaaggagctaccggagcagatt
gatacatctacatatatgccatcttaa
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