Populus trichocarpa (black cottonwood): 7463015
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Entry
7463015 CDS
T01077
Name
(RefSeq) E3 ubiquitin-protein ligase makorin isoform X1
KO
K15687
E3 ubiquitin-protein ligase makorin [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7463015
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
7463015
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
7463015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf-CCCH_4
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_DUS3L
zf-C3HC4
zf-RING_2
zf-RING_5
zf-CCCH_3
zf-RING_UBOX
zf-CCCH_PARP12
zf-CCCH_RBM22
zf-rbx1
zf-ANAPC11
zf-C3HC4_3
zf-C3HC4_4
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
7463015
NCBI-ProteinID:
XP_024455056
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All DBs
Position
4:15596240..15599469
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AA seq
387 aa
AA seq
DB search
MSQRKPCKYFAQGACWRGDHCKFVHERKEPQPLSRNMQVCTFYQKGNCTYGSRCKYEHVK
TSWVASGGAAGASSSSSPHQSVILSSVPASVGSSRDGKKEDRPLCSFDVAGDCPHGDKCS
FVHGDLCPTCGKHSLHPFQADEREEHLKSCEKNQKFLVAVKRSEEIECSVCLDRVLSKPT
AAERKFAVLPECNHPFCISCIRNWRNGSPASGMALRACPICRKTSHFVIPSLIWYSSKEE
KQEIIDTYKARLRQIDCKHFNFGNGNCPFGINCFYKHTVMPGSYTWKHHKPPPRRPPPRR
RSNAGHADSSFDYFGPTMEDLLDMFDDDYLDYDNYCDPFHEEYQLDIFDYEDYFDEERLS
PFDMALLLAGMDCGGASDISSDEDDFY
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaaaggaaaccttgcaagtattttgctcaaggagcatgctggcgaggggatcat
tgtaagtttgtgcacgaaaggaaagagcctcaacctctgtcaagaaatatgcaggtttgt
actttttatcaaaaaggaaattgcacttatggaagtcgatgcaaatatgaacatgtcaaa
acttcctgggtagcttctggtggtgctgccggggcatcatcttcatcgagtcctcatcaa
tctgtaatcttaagttctgttcctgcaagtgttggatcaagtagggatggcaaaaaagaa
gaccgtcctctctgttcgtttgatgttgctggtgattgcccccatggagataaatgttct
tttgttcatggtgatttatgccctacctgtggaaaacattccttgcatcccttccaggca
gatgagagagaggagcatttgaagtcatgtgagaagaaccaaaagtttcttgtggcagta
aaacgaagtgaagaaattgagtgcagtgtatgcttggatcgtgtactttcaaagcccaca
gcagctgaacgaaagtttgcagtcctacctgaatgtaatcatccattctgcatatcctgt
atcagaaattggcgtaatggttccccagcctctgggatggcattgagagcctgcccaata
tgtcgtaaaacatcacactttgtcatcccaagtcttatttggtattcctctaaagaagaa
aagcaagaaattattgatacgtacaaggccaggctcaggcaaatagattgcaagcacttc
aactttgggaatgggaactgcccatttggcatcaattgtttttacaagcacactgtcatg
ccgggctcatatacatggaaacatcacaagccccctccaaggaggccaccacctcgtcgc
agatccaatgcagggcatgcagattcatcatttgattattttgggccaacaatggaagat
ttactagacatgtttgatgatgattatcttgattatgataattactgcgatccctttcat
gaagaatatcaactggacatctttgattatgaggattatttcgatgaagaacgtctttct
ccttttgacatggctttattacttgcaggaatggattgtggaggagcaagtgacatctct
agtgatgaggatgatttctattaa
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