Populus trichocarpa (black cottonwood): 7463046
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Entry
7463046 CDS
T01077
Name
(RefSeq) KH domain-containing protein At4g18375 isoform X1
KO
K21444
poly(rC)-binding protein 3/4
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7463046
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
7463046
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Gene cluster
GFIT
Motif
Pfam:
KH_1
KH_2
KH_KhpA-B
KH-I_KHDC4-BBP
KH_5
Motif
Other DBs
NCBI-GeneID:
7463046
NCBI-ProteinID:
XP_006384312
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Position
4:11871505..11876867
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AA seq
546 aa
AA seq
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MAGQRNNYRKRSHSQSDYDIGANKRRNSGDDRERYVIDSQDTVYRYLCPAMKIGSIIGRG
GEIVKQLRIDTKSKIRVGETVPGCEERVVTMYSPSDETNEYEDSGNYVSPAQDALFRVHD
KVITEDLQVDEDSEESQQVTAKLLVPSDQIGCIIGKGGQIVQNIRSETGAVIRILKDEHL
PPCALSSDELVQISGEAAVVKKALYQIASRLHDNPSRSQHLLVSAVPNVYPAVGSLVGPS
AAAPIVGIAPLMGPYGSFKGDTGDWSRSLYSAPRDELASKEFSLRMVCPTANIGAVIGKG
GTIINQIRQESGATIKVDSSASEGDDCLITISAKEICDDQYSPTIEAALRLQPRCSEKME
RDSGLFSFTTRLLVPSSHIGCLLGKGGLIIDEMRKLTKAIIRIPRKDKLPKTALDDDEMV
QISGDLDIAKDALIQISRRLRANAFDREGLMSAILPVFPYLPVSAEGLEGRHYDSRDDKR
HGRGNTYAGGYGASDYAVGDSYGSYRSTQISASGGPFGAYGSYSSGRIGTSGLSGQAPVS
RRKSYY
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atggcggggcaaaggaataattacagaaagcggtctcattcgcagtcagattatgatatt
ggggcaaataagaggagaaattctggtgacgatagagaacgttatgttattgattcacag
gatacagtatatcgttatttgtgcccggctatgaagattggaagcataataggaagggga
ggggagattgttaagcaattaaggatagacaccaagtcaaagattagggttggtgaaaca
gtgccgggttgtgaagaacgtgttgttaccatgtatagtccgagtgatgagactaatgaa
tatgaagatagtggtaattatgtttctcctgctcaggatgctctgttcagggtacatgat
aaagttataacagaggatttgcaagttgacgaggactctgaagaaagtcaacaagtcact
gctaagcttcttgtaccttctgatcagataggatgtattattgggaaaggtgggcagata
gttcagaacatacgtagtgagactggtgcagtgatccgcattcttaaggatgagcatttg
cctccttgtgctttaagctcagatgagcttgtacagatttctggtgaagctgcagttgtc
aaaaaggctttatatcaaatagcatctcgccttcacgataatccatcacggtctcagcac
ttacttgtttctgctgttccaaatgtgtaccctgctgttggttcactggttggtccatct
gcagctgccccaattgttggaattgctcctctgatgggtccttatggcagtttcaaaggt
gacactggagactggtcccgctcgttgtattcagctccaagagatgaacttgcttcaaaa
gaattttctcttcgtatggtttgtccaactgcaaatattggtgctgtaattgggaaaggt
ggtaccataatcaatcagatcagacaggagtctggagcaacaatcaaagttgatagttca
gcttctgaaggagatgattgcttgataactatttcagctaaggagatatgtgatgaccag
tattctccaacaatagaagcagccttacgtttgcaacctagatgtagtgagaaaatggaa
agagattcaggtcttttctcatttactacccgtctacttgttccctcctctcatattggt
tgccttcttggtaaaggaggacttattatagatgagatgaggaaacttaccaaagctatt
attcggatacctagaaaggacaagcttcctaaaactgccttggatgatgatgagatggtg
cagatttcaggagacctggacattgccaaggatgctctcatacaaataagtcgacggtta
agagcaaatgcttttgatagggaaggtttaatgtctgcaattctaccagtttttccatac
cttcctgtctcagcagaaggtttggagggtcgacattatgacagtagagatgataaaaga
catggacgtggaaatacttatgctggtggttatggcgcaagtgattatgctgttggtgac
agttatggtagctatagaagcacacagattagtgctagtggaggtccttttggagcctat
ggaagctattcttcaggacgcattggtacttctgggttatctggccaggcccctgtttct
cgacgcaaaagttattactag
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