KEGG   Populus trichocarpa (black cottonwood): 7463073
Entry
7463073           CDS       T01077                                 
Name
(RefSeq) autophagy-related protein 16
  KO
K17890  autophagy-related protein 16-1
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop04136  Autophagy - other
Brite
KEGG Orthology (KO) [BR:pop00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04136 Autophagy - other
    7463073
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pop04131]
    7463073
   03029 Mitochondrial biogenesis [BR:pop03029]
    7463073
Membrane trafficking [BR:pop04131]
 Autophagy
  Autophagosome formation proteins
   Atg12 conjugation proteins
    7463073
 Others
  Specific organelles associated proteins
   Auto phagosome
    7463073
Mitochondrial biogenesis [BR:pop03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    7463073
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st EIF3I Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_EML ATG16 Beta-prop_TEP1_C ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_IFT140_1st WDR54 Beta-prop_SPT8 Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C NBCH_WD40 Beta-prop_HPS5 Beta-prop_IFT122_1st Beta-prop_VPS8 WD40_RFWD3 Beta-prop_DCAF4 Beta-prop_WDR19_1st Ge1_WD40 Beta-prop_EIPR1 Cytochrom_D1 Beta-prop_Vps41 Beta-prop_RIG_1st Beta-prop_DCAF12 PEP5_VPS11_N PQQ_2 Cep57_CLD_2 Beta-prop_IP5PC_F Phlebovirus_NSM WelO5 GCD14 DUF948
Other DBs
NCBI-GeneID: 7463073
NCBI-ProteinID: XP_024441695
LinkDB
Position
15:11105665..11109269
AA seq 509 aa
MSQEEIGLEAIKQALKALKKRHLLEEGAHAPAFIALSRPIISQGSEWKEKAENLEVELQQ
CYKAQSLLSNQLVVEVAESRAAKTSLQEKEAAITDLQNEATQIRDECGQLREDFEEKIKA
LELVMSENQALRTQLEEMTLKAKNAEAENKMLIDRWMLQKMQDAERLNEANALYEEMIDR
LKASGLESLARQQVDGVVRRNEDGAEYFVESTIPSTCKHKITAHEGGCASILFEYNSGKL
ISGGQDRSIKMWDTNTGSLSHTLYGCLGSVLDLSITHDNRSIIAASSSNNLYVWDVTTGR
VRHTLTGHTDKVCAVDVSKISTRHVVSAAYDRTIKVWDLQKGFCTNTIIFHSNCNSLCFS
MDGQTICSGHVDGNLRLWDIQTGKLLSEVAAHSLAVTSISVSRNGSVVLTSGRDNLHNLF
DMRSLEVCGTLRATGNRVASNWSRSCISPDDNYVAAGSADGSVHIWSISQGDIVSTLKEH
TAPVLCCSWSGLGKPLASSDKNGIIYTWT
NT seq 1530 nt   +upstreamnt  +downstreamnt
atgtcgcaagaagagattggtctagaagcaataaagcaggcgttgaaagctttgaagaag
cggcatttactggaagaaggagctcatgctcctgcctttattgctctttccaggcccatt
atttctcagggatcagagtggaaagagaaagcagaaaatctagaagtagaacttcagcaa
tgttacaaagctcaatctcttttatctaaccaacttgtggtggaggtggccgaatcgaga
gcagcgaagacttcactgcaagagaaggaagcagctatcactgatttgcaaaatgaggct
actcaaattagggatgagtgtggtcagttgagggaggattttgaggaaaagattaaagca
ttagaattggttatgagtgagaaccaggcacttagaacacaattggaagagatgactctt
aaagctaagaatgctgaggctgaaaataagatgttgattgatcgatggatgctacaaaag
atgcaggatgccgaacgccttaatgaggctaatgcactttatgaagaaatgattgatcgg
ctcaaggcaagtggtttagagagccttgctaggcaacaagtggatggagttgtccggcga
aatgaagatggtgctgagtactttgttgaatcaacgatcccttctacatgcaagcacaag
atcactgctcatgagggtggctgtgcttctatattgtttgagtacaattctggaaaattg
attagtgggggacaagaccggtcaatcaagatgtgggatacaaatacaggatcattaagt
cacactctttatggttgtcttggctctgttcttgatctttccattactcatgacaataga
tccatcattgcagctagcagctcaaacaacttgtatgtatgggatgttaccacaggacga
gtacgtcacactctcacaggtcacactgataaagtgtgtgctgttgatgtcagcaaaatt
tcaactcgtcatgttgtcagtgctgcttatgatcgtaccataaaagtgtgggatctgcaa
aaaggtttctgcaccaacacgatcattttccacagcaactgcaattctctttgcttcagc
atggatggacagactatttgttcaggccatgttgatgggaatcttcgtttgtgggatatt
cagacaggaaagctacttagtgaagtagctgcacattcgcttgctgttacatcaatatct
gtgtctcgaaatggaagtgttgtactgacaagtgggagagacaacttgcataacttattt
gatatgcgatccttggaagtttgtggcactctaagagcaactggaaacagggtggcttct
aattggagtcgctcctgtatcagtcctgatgacaactatgttgctgctggttcagctgat
ggatctgtacatatttggtcaatatctcaaggtgatatagtaagcaccctgaaggaacac
acagctccagttctttgttgttcatggagtggtcttggcaaaccactagcctcttctgac
aagaatggaattatctacacctggacatga

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