Populus trichocarpa (black cottonwood): 7463216
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Entry
7463216 CDS
T01077
Name
(RefSeq) serine/arginine-rich splicing factor SC35
KO
K12891
serine/arginine-rich splicing factor 2/8
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7463216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7463216
Spliceosome [BR:
pop03041
]
Common components
Common spliceosomal components
SR proteins
7463216
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
7463216
NCBI-ProteinID:
XP_024451900
LinkDB
All DBs
Position
2:complement(6993793..6997612)
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AA seq
235 aa
AA seq
DB search
MSHFGRSGPPDIRDTFSLLVLNITFRTTADDLFPLFDKYGKVVDVFIPRDRRTGESRGFA
FVRYKYADEAQKAVDRLDGRVVDGREIMVQFAKYGPNAERIRDGRIVESTSKIKSRSRSR
SPRPKYRDGYRDRDRDYRRRSRSRSRDRSEQDGYRGRDKDYHRRSVSCSPDRRKDRGRGY
DEERRSWSRSHGSPNSPRSPPRKARLRDESPNGHNDNKHSPTSKSISPHDEPVDS
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcacttcggccgatctggtcctccagatatcagagacaccttttctctcctcgtc
ctcaacatcactttccgcaccaccgccgacgatcttttccctctcttcgacaagtacggc
aaggtagttgatgtatttatacctcgcgatcgaaggactggagaatcgagaggttttgcc
tttgtgaggtataaatatgctgatgaggcacaaaaggcagttgataggcttgatgggaga
gttgtggacgggagagagattatggtgcaatttgcgaagtatggtcctaatgcggagcga
attcgggatgggaggatagtggaatcaacttcaaagataaagagtaggtccagaagccgc
agccctcgtccaaagtatcgggatggctacagggaccgggacagggattacagaaggaga
agtcgcagtagaagcagggatcgatctgaacaggacgggtatcgaggtagggataaagat
tatcatcgccgaagtgtgagctgcagccctgatcgccgcaaagaccgtggtagaggatat
gatgaggaacgacgcagttggagccggtctcatggaagccctaattctccaaggagtcct
ccacgcaaggctcgtctcagggatgaaagtcctaatggacacaatgataacaaacactct
cctacttcaaagagtatctctcctcatgatgaaccggtggattcttga
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