Populus trichocarpa (black cottonwood): 7463221
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Entry
7463221 CDS
T01077
Name
(RefSeq) eukaryotic peptide chain release factor subunit 1-3
KO
K03265
peptide chain release factor subunit 1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7463221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7463221
03012 Translation factors [BR:
pop03012
]
7463221
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
7463221
Translation factors [BR:
pop03012
]
Eukaryotic type
Release factors
7463221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eRF1_2
eRF1_3
eRF1_1
baeRF_family10
acVLRF1
She2p
Motif
Other DBs
NCBI-GeneID:
7463221
NCBI-ProteinID:
XP_006385863
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Position
3:complement(16930626..16948472)
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AA seq
436 aa
AA seq
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MSDGHETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASN
IKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPIN
ASLYLCDNKFHTEALSELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHG
RGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQS
DMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTG
KYVFGVDDTLKALEMGAVETLIVWESLDINRYQLKNSATGEIVIKHLNKEQETNQDNFRD
AETKAELEVQDKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDM
RTFDDLSDGDVYDDSE
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacggtcatgagactgataagaacattgagatttggaaaataaaaaagcttatc
aaagcactggaagctgctcgaggtaatggcacaagcatgatttcgcttatcatgcctcca
cgtgatcagatttctcgtgtcactaagatgcttggagatgagtttggaactgcgtcaaac
attaagagcagggtcaatcgtcaatctgtgcttggtgctattacatctgctcagcaaagg
ctcaaactttacaacaaagttcctcccaatgggcttgtgctttacactgggacaattgtg
actgaagatgggaaggaaaagaaagtgacaattgactttgagcctttcaggcccataaat
gcgtctctttatctctgtgacaacaaatttcatacagaagctctgagcgaactcttggaa
tctgatgacaagttcggctttattgtcatggatgggaatgggactcttttcgggacactg
agtggcaacactagagaagtgctgcataaattcactgttgaccttccgaagaaacatggg
agaggagggcaatctgctcttcgatttgctcgacttcgaatggagaagcgccacaactat
gtgaggaagacagcagaactagccacacagttctatatcaatcctgccaccagccagcct
aatgtttcgggattgatacttgctggatcagctgacttcaagactgagcttagtcaatcc
gatatgtttgatcctcgacttcaggctaaaattctgaacgtggttgatgtttcatatgga
ggggaaaatggttttaatcaggcaattgaactgtcagcggaaatcctttccaatgtgaaa
tttatacaggagaagcgcttgattggcaagtactttgaagagataagtcaggatacagga
aaatatgtttttggtgttgatgacacactgaaggctttggagatgggtgctgttgaaact
ctaattgtgtgggaaagtttggatattaataggtaccagttgaaaaactctgccactggt
gagattgtcataaaacatttgaataaggagcaggaaaccaaccaggacaactttagggat
gcagaaaccaaagctgaactggaagttcaagataaaatgccactgctggagtggtttgca
aatgagtacaagcggtttggttgcactctagagtttgttactaacaaatcacaagaagga
tcccagttctgcagagggtttggtgggattggtggtatcctccgttaccagcttgatatg
agaacatttgatgatctttctgatggagatgtttatgatgattctgaataa
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