Populus trichocarpa (black cottonwood): 7463421
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Entry
7463421 CDS
T01077
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog B
KO
K08775
breast cancer 2 susceptibility protein
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03440
Homologous recombination
pop03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
7463421
03460 Fanconi anemia pathway
7463421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7463421
03036 Chromosome and associated proteins [BR:
pop03036
]
7463421
03400 DNA repair and recombination proteins [BR:
pop03400
]
7463421
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
7463421
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
7463421
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
7463421
FA (Fanconi anemia) pathway
Downstream FA components
7463421
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_OB1
BRCA2
BRCA-2_helical
Motif
Other DBs
NCBI-GeneID:
7463421
NCBI-ProteinID:
XP_002320595
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All DBs
Position
14:16362759..16369776
Genome browser
AA seq
1184 aa
AA seq
DB search
MSSWKIFSDSGNNFRWEVTGQIIHTKPEPKQSGALIPPSSSRTHLPSMADLLLQGCPKLL
ENGNAPIFRTGSGKSVALKQSSIAKALSVLRDDDDAGEACGGENELSFSKLRKKGNEDNG
NAPIFHTGSGKSVVLKQSSIAKALSVLGDDDGYSGNPGEVHGRNNERCFSNSLFHTGSGK
SVDISSAGLVRAKRLLGMEEENYSSNFQGFKCPRKSSTVNEQFGWQDVMHSGTKVSMKNN
GVIGDDLPAPRSSLVSKTVILESELTKEVNTNLLEPEIQKPPPIKFHTAGGRSLSVSSEA
LKRARSLLGDPDLGTFLNEGDAVDQGLSVFEGSGFGDASSNKENVFYSAFTHPRASSKHI
SKTFISPLKSSANYVQSSINPKNVISGSNLIKKFDAVHNDSISKVNNNATYVQKPVRNGL
CTSATMVANSLDNITGSRMNSLQRTSSRMIPLQKSLCAPLPDISNTIGTAYSNNGQANGE
KRKLGRGISISPFKKPRSSKFTTPLNRNVSSVPSGLSTVSYESSSCRKKVSTRYPFQVPR
MYIKEYFGGHLSDKRLSEYFTDQVRQIKSNNADKYMFCDESGRDSIGAEAFYDMLLQSGA
LSQYASKEWVINHYKWIVWKLACYERCCPEKSAAKFLSVSNVLEELKYRYEREVNHGHRS
AIKRILEGDAPPSSMMVLCISSIYFGCEPKVEVPSVALDGAEHSNAAKLELTDGWYSVDA
LLDISLSMHLDAGKLFVGQKLRIWGAGLCGWAGPVSSFEALKTVSLSLHINGTYRAHWAD
RMGFCKGIGAPLAFRCIKSNGGPVPRVLVGVTRVYPVLYKDKLSNGSRTIVRSERMEAKL
VQLNNQRRSVIIEGIVSEFQRGMKSSNIYTDIDSEEGAKIFKILETSAEPEVLMAEMSPQ
QLASFASYQSKLEATRQLDMEKAIGKALQDAGLGEREVTPFIRVRVVGLTNYQEKGARAP
KEGLITIWNPTEKQKSDLVEGQAYAVAGLLPVSSDSNTLYLQARGSTTKWQPLSSLAMQQ
FQPFFSPRAPVLLSNLGEVPLCREFDIAALVLHVGDIYTAAQQKKQWVFVTDSSISRFDS
EDTSKSLLAISFCSPYMDNDSFTPINYNLAGSTIGLCNLIKRAKDQTYHLSIAEATENST
YSLNFDSSNFLHLKNAAASTQSWAKTSTSIINKLKERVLFIIGD
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgtggaaaatattctccgactccggaaacaatttccgatgggaagtcaccggc
caaatcatccacacgaaacccgaacctaaacaaagcggagccctaatccccccttccagc
tccagaactcacctcccttccatggccgatctcttactccaaggatgtccgaaacttcta
gagaacggaaatgcaccgattttccgcacaggatcagggaaatcggttgcgttaaaacag
tcttcgattgcgaaagcgttatctgtcctcagagacgatgatgatgcaggtgaagcttgt
gggggagagaatgaacttagtttttcgaagcttcgcaagaaagggaatgaagataatgga
aatgcaccaattttccatacaggatcagggaaatcggttgtactgaaacaatcttcgatt
gcaaaagcgttgtctgttcttggtgatgatgatggatattctggcaatccaggtgaagtg
catggtagaaataatgaacgttgtttctctaattctcttttccatactggatctgggaaa
tcagttgatatatcttctgccggtttggttagagcgaagaggttgttgggaatggaggaa
gaaaattatagttctaattttcaaggatttaaatgtccaaggaaatcttccactgtcaat
gagcaatttgggtggcaggatgtaatgcattcagggacgaaagtcagtatgaaaaataat
ggggttattggtgatgatttgccagctcctaggtcttctttagtttctaagactgttatt
ttagaaagtgaattgacgaaggaggtcaatacaaacttgttggaacctgaaatacaaaaa
ccacctccaattaaattccatactgccggtggaagatccctatctgtttccagtgaggca
ttgaaacgtgcaaggagtcttcttggtgacccagacctaggaactttcttaaatgaggga
gatgcagttgatcagggcctctcagtttttgaaggtagtggatttggtgatgcttcatca
aacaaggaaaatgttttttactctgcttttacccatcctagagcctcaagtaaacatatc
tcaaaaactttcatttcacctcttaaatcatctgcaaactatgtccagtcatctattaat
ccaaaaaatgttatttcggggagtaacttgataaagaaatttgatgctgttcacaatgac
agcatctccaaagttaataacaacgcgacttatgtacagaagcctgtaaggaatgggctc
tgtacatctgctacaatggttgctaattctctggataatattactggctcaaggatgaat
tcacttcaaaggactagctccaggatgataccacttcaaaagtcattgtgtgcgccgttg
cctgatatttcaaatacaattggcacagcttactcaaataacggacaagctaatggagag
aagaggaaacttggaaggggaatttctatttctccatttaaaaagccccgcagttccaaa
ttcaccacccctttgaacaggaatgtctcatctgttcccagtggtttatctactgtatca
tatgaaagttccagctgtagaaaaaaagtttccactagatatcctttccaggttcctaga
atgtatatcaaggaatactttggagggcatttatcagataagcgcctgtcggagtacttt
acagatcaagtaagacagatcaagtcaaataatgcagataagtacatgttttgcgatgaa
tctggccgagatagcattggagctgaagcattctatgacatgttgcttcagtctggagct
ttgtcacaatatgcttctaaagagtgggttataaatcattacaagtggatagtttggaaa
cttgcatgttatgagagatgctgcccagaaaaatctgctgcaaaatttttgtcagtctcc
aatgtgcttgaggaattgaagtacagatacgagagagaagtaaatcatggccatcgatct
gcaattaagagaattctggaaggggacgcaccaccttcttcaatgatggttctatgcatt
tcttccatctacttcggttgtgaaccaaaggtagaggttccttcagtggcattagacggg
gctgagcatagtaatgctgcaaaactggaactgaccgatgggtggtattcagtggatgcg
cttctggatatatcactttcaatgcatctggatgctgggaaactgtttgtgggacagaaa
cttcgaatatggggagcaggattatgtggttgggctggtcctgtgtcatccttcgaggca
ttgaagactgttagtttgtcattgcatataaatgggacttatagagctcactgggctgat
cgaatgggattttgtaagggaattggtgctcctttggcttttaggtgcataaagagtaat
ggcggtcctgtccctcgggtgttagttggagtcacacgggtttaccctgttctatacaag
gataaattaagtaatggcagcagaactattgtgagatcagagagaatggaggctaaactg
gtgcaattgaataaccagaggcgttcagttattatagagggtattgtttctgagtttcaa
agagggatgaaaagttctaacatatatactgatattgatagtgaagaaggagcaaaaata
tttaagattcttgagacatcagctgaaccagaagtcctaatggcagagatgagtccacag
caactagcatcatttgcctcttatcaatcaaaactagaggcgacaaggcaactggacatg
gagaaagcaattgggaaagctttacaagatgctggcttaggggagagagaagtgacccca
tttattagggtcagggtagttgggttaactaattatcaagaaaagggcgcccgcgcccct
aaagaaggcttaataacaatttggaacccgacagagaagcagaaaagtgatcttgtcgag
gggcaggcttatgctgtagcaggactattacccgtgagttctgattcaaatacactttac
ttgcaagcaagaggatctacaaccaaatggcaacctttatcttccctggcaatgcaacag
tttcagccatttttcagccctcgagcaccagtattattgtcaaatttgggtgaagttcct
ctttgtcgtgaatttgacattgctgcacttgtgttgcacgtgggagatatttatacagct
gctcagcaaaagaaacagtgggtgtttgtgactgatagctccatttctagatttgattca
gaggatacgtcaaagtccttactggccatcagcttctgctcaccatacatggataacgat
tcatttacaccaatcaactacaatcttgctggatccacaattggcttgtgtaatctcatc
aagagagcaaaggaccaaacatatcatctctcgatagctgaagcaacagaaaattcgacc
tattctttgaattttgattcctccaattttttgcaccttaaaaatgctgctgcctctact
caaagctgggccaagacctctacctcgattattaataaacttaaggagagggttttattt
attattggtgattga
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