KEGG   Populus trichocarpa (black cottonwood): 7463449
Entry
7463449           CDS       T01077                                 
Name
(RefSeq) ras-related protein RABF1 isoform X1
  KO
K07887  Ras-related protein Rab-5A
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop04144  Endocytosis
pop04145  Phagosome
pop04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:pop00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    7463449
   04145 Phagosome
    7463449
   04148 Efferocytosis
    7463449
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pop04131]
    7463449
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pop04147]
    7463449
   04031 GTP-binding proteins [BR:pop04031]
    7463449
Membrane trafficking [BR:pop04131]
 Endocytosis
  Rab GTPases and associated proteins
   Rab GTPases
    7463449
 Endosome - Lysosome transport
    7463449
Exosome [BR:pop04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   7463449
  Exosomal proteins of other body fluids (saliva and urine)
   7463449
  Exosomal proteins of colorectal cancer cells
   7463449
  Exosomal proteins of bladder cancer cells
   7463449
GTP-binding proteins [BR:pop04031]
 Small (monomeric) G-proteins
  Rab Family
   Rab5/17/22/31 [OT]
    7463449
SSDB
Motif
Pfam: Ras Roc Arf RsgA_GTPase Gtr1_RagA GTP_EFTU MMR_HSR1 AAA_7 AAA_16 TniB
Other DBs
NCBI-GeneID: 7463449
NCBI-ProteinID: XP_002316386
UniProt: B9HUI6
LinkDB
Position
10:complement(20995855..20999653)
AA seq 201 aa
MGCSSSLPDRSTGRLGGLNNSESGGVADAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP
TSKVTIGASFLSQTIALQDSTTIKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPE
TFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPTQDGIEYAEKNGMFFIETSAKT
ADNINQLFEEIAKRLPRPSST
NT seq 606 nt   +upstreamnt  +downstreamnt
atgggttgctcctcttctcttccagataggagtactgggagattgggtggacttaacaat
tcagagagtggtggagtggctgatgccaaaaacctacgcgtaaagctggttttattaggt
gattctggtgttggtaaaagctgtattgttcttcgctttgttcgtggccagtttgatcca
acatccaaggtaactattggagcttcatttttgtcacaaacaatagctttacaggattct
acaacaattaagtttgagatatgggatactgctggacaagaaaggtatgccgcactagca
ccgctatattacagaggtgctgcagttgcagttattgtgtacgatataacaagcccagag
acattcaacaaagcacagtattgggttaaggagctacaaaaacatgggagccctgatata
gtcatggctttagtaggtaacaaggctgatcttcatgagaagcgagaagtacccactcaa
gatggcattgaatatgcggagaagaatgggatgttctttattgagacatctgcaaaaact
gcagataatataaatcaactgtttgaggaaattgctaagcgactcccgcgcccttcctca
acatga

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