Populus trichocarpa (black cottonwood): 7463788
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Entry
7463788 CDS
T01077
Name
(RefSeq) probable E3 ubiquitin-protein ligase ZFP1
KO
K19041
E3 ubiquitin-protein ligase RNF38/44 [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7463788
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
7463788
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
7463788
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4_2
zf-C3HC4
zf-RING_5
zf_RING_Vps8
zf-C3HC4_3
zf-RING_11
zf-RING_UBOX
zf-ANAPC11
zf-RING_Vps41
zinc_ribbon_16
zf-RING_16
FANCL_C
PHD_NSD
Prok-RING_4
FAR1_N
zf-RING_10
PHD
Motif
Other DBs
NCBI-GeneID:
7463788
NCBI-ProteinID:
XP_024437400
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All DBs
Position
11:complement(12543240..12547592)
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AA seq
551 aa
AA seq
DB search
MGQRNMLCTNQMIDLEMDQQSQGYLHPEPCILLGGVTNFRPSDIPTMVAASGNTNNRDAH
LVDHYDGAMFYGMPQYHGLHPHRQYHGPNLDLSVATAPNFYVPYMTPSSGIPISHGPCDQ
LSSSNNYGVIEVSADEYGTNSHFMDNARGSFKRKNAEGNPGNFQYLNALASSSSSVAPLN
TRHSEGGALMDATSFTPPHYRGSSASSIRDVGSQSSVRNRLGAAGLDPALAHNLNHFIQG
NYLGQPYQPSGSLWLDQHLSNSGTDAGTSGWTQTTAIPYMHGNNLNGGPIEIGNMGLQRY
HEPASNRSNASFSRPSAVNLQHHNFHHMSPPIQGMRGHNINILPQAPAASFRVPTANASQ
ITMNPSQDGLDIGLRHLGSVQPTGLRMYRSHREGVVPETTLRHRNLPQLRVLPTDGVAIL
GFPDYYEVENHVDHHRDMRLDIEDMSYEELLALGERIGNVSTGLSEGTIRSQLKTRTYLS
SPSINLEEAACMDQEADSCIICQDDYKSKEKIAALDCGHEYHAVCLKKWLRLKNVCPICK
SEALNTERMDV
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgggacaaagaaacatgctatgcaccaatcagatgattgatttagaaatggatcaacaa
agccagggatatctacatcctgagccttgcatccttttagggggtgtgacaaacttccga
ccatctgatattccaaccatggtagcagcttcagggaacactaacaatcgtgacgctcat
ctagtggatcattatgatggtgctatgttttatggtatgccccaataccatggtcttcat
ccccatcgtcaatatcatggcccaaatcttgatttaagtgttgctactgcacccaacttc
tatgttccttacatgactccatcttctggtattcctatcagtcatgggccttgtgatcag
ttatcatcttccaacaattatggagtgattgaagtttctgctgatgagtatggaacaaac
agtcacttcatggataatgctagaggttcattcaaaagaaagaatgctgaaggaaaccca
gggaatttccagtatctgaatgcattggcaagctctagttcttcagttgccccattgaat
actaggcattctgaggggggtgctctgatggatgctacatcattcaccccgccacattac
cgagggagcagtgcttcatcaatcagagatgtgggatctcaaagcagtgtgaggaataga
ttaggtgctgctgggttagatcctgctctggcgcacaatctaaaccattttattcaagga
aactatttgggtcaaccctatcagccaagtggctctctttggctagatcaacatttaagc
aacagtggtactgatgcaggcacttcaggatggactcagaccactgctattccttacatg
catgggaacaatctcaatggaggtcctatagaaattggaaatatgggtctacagcggtat
catgagccagctagcaacagaagtaatgccagtttctcccgcccttctgcagtgaacctt
cagcatcacaattttcatcatatgtctccaccaattcaaggaatgagaggccacaatatt
aatattcttcctcaagcaccagcagcttcattcagagttcctacagccaatgcctcacaa
atcaccatgaatccatctcaagatggtttagatattggacttaggcatctaggatcagtt
caaccaactggccttagaatgtacaggtctcaccgtgagggagttgtacctgagaccacc
ctaagacatcgcaacctccctcagttgagagtattgccaacagatggggtagcaatatta
gggttccctgactattatgaagtagagaatcatgttgaccaccacagagatatgcgcttg
gatatagaggacatgtcttatgaggagcttcttgcactaggggagcgaattggcaatgta
agtactggattgtcagagggaaccatcagaagccaattaaaaacaaggacttatttatca
tctccttcaatcaatttggaagaggcagcttgtatggatcaagaagctgattcttgtatt
atttgccaggatgattataagagcaaggagaaaattgcagctcttgattgtggacatgag
tatcatgcagtttgcttgaagaagtggctacgcttgaagaacgtctgccccatctgcaaa
tcagaagccttaaacacggaaagaatggatgtttaa
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