KEGG   Populus trichocarpa (black cottonwood): 7463897
Entry
7463897           CDS       T01077                                 
Name
(RefSeq) sm-like protein LSM5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03018  RNA degradation
pop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    7463897
  09123 Folding, sorting and degradation
   03018 RNA degradation
    7463897
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    7463897
   03041 Spliceosome [BR:pop03041]
    7463897
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     7463897
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     7463897
Spliceosome [BR:pop03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    7463897
SSDB
Motif
Pfam: LSM DUF7452 Ntox4
Other DBs
NCBI-GeneID: 7463897
NCBI-ProteinID: XP_002299989
UniProt: A0A2K1Z498 A9PC96
LinkDB
Position
1:complement(29131874..29133724)
AA seq 88 aa
MANTNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEG
RRITKLDQILLNGNNIAILVPGGSPDPE
NT seq 267 nt   +upstreamnt  +downstreamnt
atggccaacaccaatccctcgcagctcctcccgtcagagctaatagacaggtgcataggg
tcgaaaatatgggtgataatgaaaggagacaaggagcttgtcggtactctgaggggattt
gatgtctatgtcaacatggtccttgaagacgttactgaatatgaaatcacggctgaaggg
cgacggattaccaagcttgatcagatattgctgaatggaaataacattgccattctggtt
cctggtggttcccctgatccagaatga

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