Populus trichocarpa (black cottonwood): 7463897
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Entry
7463897 CDS
T01077
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7463897
09123 Folding, sorting and degradation
03018 RNA degradation
7463897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7463897
03041 Spliceosome [BR:
pop03041
]
7463897
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
7463897
mRNA degradation factors
5'-3' decay
Lsm complex
7463897
Spliceosome [BR:
pop03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
7463897
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF7452
Ntox4
Motif
Other DBs
NCBI-GeneID:
7463897
NCBI-ProteinID:
XP_002299989
UniProt:
A0A2K1Z498
A9PC96
LinkDB
All DBs
Position
1:complement(29131874..29133724)
Genome browser
AA seq
88 aa
AA seq
DB search
MANTNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEG
RRITKLDQILLNGNNIAILVPGGSPDPE
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaccaatccctcgcagctcctcccgtcagagctaatagacaggtgcataggg
tcgaaaatatgggtgataatgaaaggagacaaggagcttgtcggtactctgaggggattt
gatgtctatgtcaacatggtccttgaagacgttactgaatatgaaatcacggctgaaggg
cgacggattaccaagcttgatcagatattgctgaatggaaataacattgccattctggtt
cctggtggttcccctgatccagaatga
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