Populus trichocarpa (black cottonwood): 7464055
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Entry
7464055 CDS
T01077
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7464055
03036 Chromosome and associated proteins [BR:
pop03036
]
7464055
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
7464055
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
7464055
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
HHH_9
Spt6_S1
Tex_central_region
HHH_3
HTH_44
SH2
OB_PDCD11
Tex_N
Motif
Other DBs
NCBI-GeneID:
7464055
NCBI-ProteinID:
XP_002322597
UniProt:
A0A2K1X9V4
LinkDB
All DBs
Position
16:1616327..1625890
Genome browser
AA seq
1692 aa
AA seq
DB search
MGKNVVSDEDEVEFEDEEREPVDGDRIDRRRHHDDDDDEDEEGQDEYEKDDFIVDDVEEE
EEADEEEERADSDEERLKKKKKKKKREAEDVLDEDDYELLRDNNVYHHRPKDSKKFKRLK
KAQRDSDEDLSDDEFDGSGKGGRTAEEKLKRSLFGDDEGVPLEDMPEEEEQEEVEEDADI
GDEDEMADFIVDEDDEDGTLVRRKKLKKKKSRQASGASSSALQEAQEIFGDVDELIQMRK
QGLESSEWRERRLEDEFEPTVLFEKYMTEKDDQIRMIDIPERMQVSEESTGPPPLDDFSI
LEESNWLYSQIASGTVPLFAKNGLFINKDDVTRFLELHHIQKLDIPFIAMYRKEECLSLL
KDPDQHEDNENYDDTDKNPTFKWHKVLWAIQDLDRKWLLLQKRKSALNSYYNKRFEEESR
RIYDETRLNLNQQLFESILKSLKTAESEREVDDVDAKFNLHFPPGEVGADEGQYKRPMRR
SQYSICSKAGLWEVASKFGYSAEQLGMQLSLLKMEDELQDAKETPEEMASNFTCAMFESP
QTVLKGARHMAAVEISCEPCVRRYVRFIFMDNAVVSTSPTADGNAAIDSFHQFAGVKWLR
EKPIKMFEDAQWLLIQKAEEEKLLQVTVKLPQKVMDQLIEDCNGRYLSVGVSKYAQLWNE
QRSLILKDALFGFLLPSMEKEARSLLASRAKNWLLYEYGKVLWNKVSVGPYQRKESDVSM
DDEAAPRVMACCWGPGKPATTFVMLDSSGEVLDVLYTGSLTLRSQNVNDQQRKKNDQQRV
LKFMTDHQPHVVVLGAAHLSCTKLKDDIYEIIFKMVEENPRDVGHEMDELSVVYGDESLP
RLYENSRISSDQLPGQSGIVKRAVALGRCLQNPLAMVATLCGPAREILSWKLNPLENFLT
PDEKYLVIEQVMVDATNQVGLDINLATSHEWLFAPLQFISGLGPRKAASLQRSLVRTGAI
FTRKDFVTAHGLGKKVFVNAVGFLRVRRSGLAASSSQFIDVLDDTRIHPESYGLAQELAK
VVYEKDSGDANDDDDALEMAIEYVRERPNLLKTFAFDLYFKDNKRDNKKETFKDIKMELI
QGFQDWRKQYKEPTQDEEFYMISGETEDTLAEGRVVQATVRRVVGGKAICALETGLTGIL
TKEDYADDWRDIPELSDKLREDDILTCKIKSIQKNRYQVFLVCKDSEMRSNRYRQVQNLD
LYFHEDQSSMRSEQEKVRKERELAKKHFKPRMIVHPRFQNITADEAMEFLSDKDPGESII
RPSSRGPSYLTLTLKVYDGVYAHKDIVEGGKEHKDITSLLRIGKTLKIGEDSFEDLDEVM
DRYVDPLVGHLKSMLNYRKFRSGTKAEVDELLRIEKSQQPTRIVYSFGISHEHPGTFILT
YIRSTNPHHEYVGLYPKGFKFRKRMFEDIDRLVAYFQKHIDDPLHESAPSIRSVAAMVPM
RSPATRGSSWGGSTDEDGWRGQSFDRDRSSGPGSRTGRNDYRSGGSRDGHQNGPPRPFSG
RGRGRGSYNSTRGNNSGNERQDSGYDKPRWDSGTKDNDEGWGSFPGAKVQNSPGREAFPG
GWGTGASGGDNGGRGHGNGGDTDSGNAGWGNTSLKRDSAQGGWGAGGGGSGGGDSGHGTG
GGGTDNGNSGWGNSSKKGGTQSGWGSGGRGGGGDVGQGSGGVTDDGKWGTASKRDSSQSQ
ADNGWSGGGGGW
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaaacgttgtttctgatgaagatgaggtggagttcgaagacgaagagagagag
cctgttgatggagatagaattgaccgccgccgccaccacgacgacgacgacgacgaggat
gaagaagggcaggatgaatatgagaaggatgattttatagtggatgatgttgaggaagaa
gaggaggcggatgaagaagaggagagggcagatagtgatgaagagaggctcaagaagaag
aagaaaaagaagaaaagagaagctgaggatgtccttgatgaagatgattacgagctcctg
cgggacaacaatgtgtaccatcatcggccaaaggatagcaaaaaattcaagcgtttgaag
aaagctcagagggattcagatgaggacctttctgatgacgagtttgatggaagcggtaaa
ggtgggcgaactgctgaggagaaactgaagcgcagcttatttggtgatgatgaaggtgtt
ccacttgaggatatgcctgaagaggaggagcaagaagaagtggaagaggatgcagacatt
ggtgatgaggatgagatggctgattttatcgtggatgaagatgatgaggatggaacttta
gtgagacgcaagaagctaaagaaaaagaaatctcggcaggcatctggagcttcatcttct
gctttgcaagaagctcaagaaatatttggtgatgttgatgaactcatacagatgcgcaag
caaggtttagaatctagtgaatggagagaaaggagattggaagatgaatttgaaccaact
gtcctatttgaaaaatacatgactgagaaagatgatcagattcggatgattgatattcca
gaaagaatgcaggtatccgaggaaagcactggtcctcctccattggatgatttcagcata
ctggaggagagcaactggttatatagtcagattgcaagcggaacagtacctttgtttgcc
aagaatggactgtttataaacaaggatgatgttacccgatttttggaattacatcacatt
cagaagttagatatacccttcattgctatgtatcggaaagaggaatgtttaagcctgttg
aaagatcccgatcaacatgaagacaatgaaaattatgatgacactgataaaaatcccaca
ttcaagtggcacaaggttctttgggccatccaggacttggacaggaagtggctacttctt
cagaaacgaaagagtgccctcaattcatactacaataagcgctttgaagaagaatctcga
cggatatatgatgaaacgagacttaatttaaatcagcagctgtttgagtcaattcttaaa
tcactgaagactgctgaatcagaaagagaggttgatgatgtcgatgcaaaatttaacctg
cattttccaccaggtgaggttggggctgatgaaggacagtacaagaggcccatgcggaga
tcacaatacagtatctgtagtaaggctggcctatgggaagttgcaagtaaatttggttac
agtgccgagcaactgggaatgcagttatctttattaaagatggaggacgagttgcaggat
gccaaggaaacaccagaggagatggcttcgaattttacatgtgcaatgttcgaaagtccc
caaacagttcttaaaggggctaggcacatggctgcagttgagataagttgtgagccctgt
gtcaggagatatgtccgtttcatttttatggacaatgctgttgtgtctacaagtccaacg
gcagatgggaatgctgccattgattccttccatcagtttgcgggtgtcaagtggttgcgt
gaaaagccaatcaagatgtttgaggatgcacaatggctccttatccaaaaggctgaagag
gagaaacttcttcaagtcactgttaagcttccacaaaaagttatggatcaattgattgag
gactgtaatggtcgctacttgagtgttggtgtcagtaaatatgctcaactgtggaatgag
caaaggagtttgatactgaaggatgcactctttggttttttgttaccttcaatggagaaa
gaggctagatccttgttggctagcagagctaaaaactggttgctttatgaatatgggaag
gttctgtggaataaagtctctgtgggaccatatcaacggaaagaaagtgatgtttccatg
gacgatgaagctgcacctagggtgatggcctgctgttggggtcctggaaaaccagcaact
acttttgtgatgttagattcatctggggaggttttagatgtgctttacactgggtccctt
acattaagatctcaaaatgttaatgatcagcaacgcaagaaaaatgatcagcaacgtgtt
ctgaaatttatgacagaccaccaacctcacgtggtggttctgggagctgcacacttgtct
tgtactaaactgaaagatgatatttatgagattatctttaaaatggtggaggaaaatcct
agagatgttggacatgagatggatgaactgagcgttgtgtatggggacgaatctctccct
cgtttatatgaaaattctcggatttcttctgatcaactacctgggcagtcaggcattgtt
aaacgggctgttgctcttggccgttgtctgcaaaatcctttggctatggttgcaacacta
tgtggtccagccagggagattttatcttggaaactaaaccctttggagaactttcttacc
cctgatgagaaatacttggtgattgaacaagttatggtagatgccacaaaccaggtgggc
cttgacattaatttggccacaagccatgaatggttattcgctcctttgcagttcatttct
gggcttggacctagaaaggcagcatctttacagaggtctctagtaagaactggagcgatt
ttcactcgcaaggactttgttacagctcacggtcttggtaaaaaggtgtttgtcaatgca
gttggttttttgcgtgtccggaggagtggccttgctgctagcagcagccagttcattgat
gtgttagatgatacgaggatacatccagaatcctatggtctcgcacaggagttggcaaaa
gttgtttatgaaaaggacagtggtgatgcaaacgacgatgacgatgcattagagatggca
atagaatatgttagagagcggcctaatttattgaaaacatttgcttttgatttgtatttt
aaagacaataagcgggacaacaagaaggagactttcaaagatataaaaatggaactgata
caaggtttccaggattggcgtaaacagtataaagaaccaacccaggacgaggaattttat
atgatttcaggtgaaactgaggatacccttgctgaagggagagttgtacaagccacggtt
cgcagggtggttggtggaaaggcaatatgtgcactggaaactggtctgactgggattctt
acgaaggaggactatgctgatgattggagggatatacctgagttgtctgacaagctgcgc
gaagatgatatactgacttgcaagatcaaatcaattcaaaagaatagatatcaagtgttc
ttggtttgcaaagacagtgagatgagaagtaaccgatatcggcaggtacaaaaccttgat
ctctattttcatgaagaccaaagcagtatgaggagtgagcaggagaaggttcgcaaagag
agggagcttgcaaagaaacattttaagcctagaatgattgttcatccacgcttccagaat
ataactgctgatgaagccatggagttcttatccgacaaggatcccggagaaagtattatt
cgtcctagttctcgtggaccttcgtatttaactttaactcttaaagtttatgatggagtt
tatgctcacaaagacatagtcgaaggggggaaggaacacaaagatatcacaagtttactt
cgtattgggaagacattgaaaataggagaggattcttttgaggatttggatgaggtaatg
gaccgctatgttgatcccttggtgggccatctaaagtcaatgctaaattatcgcaagttc
agaagtggcactaaagcagaagttgatgagctcctaaggattgagaaatcacaacagcct
actaggatagtttattcgtttggcatttctcatgaacacccagggactttcattctcact
tatataaggagtacaaatccacatcacgagtatgttggtctatatcctaagggattcaag
tttcgaaagcgcatgtttgaggacattgaccggcttgtggcatattttcaaaagcatata
gatgatcccttacatgaatcagcaccatcaatcaggtcagttgctgccatggtcccaatg
cgaagccctgcaacaaggggttcttcctggggtggttcaacggatgaagatggctggaga
gggcaatcttttgacagagatcgttcttctggtccaggttccaggacaggtcgaaatgat
tatagaagtggtggtagtcgagatggtcatcagaatgggcccccaagaccatttagtggg
cgaggacgtggtcgcggatcgtataacagcaccagaggaaataatagtggcaatgagagg
caagattctggttatgacaagcccagatgggattcaggtaccaaggataacgatgaaggt
tggggcagtttcccaggtgccaaagtccaaaactctcctggcagggaagcctttcctggt
ggctggggaactggtgcaagtggtggtgataatggtggtcggggccatggaaatggtggt
gacactgatagtgggaatgctggctggggtaatactagcttgaaaagagattcagcacaa
gggggctggggtgctggtggaggtggaagtggtggtggtgactctggtcatggaactggt
ggtggaggcactgacaatgggaattctgggtggggtaatagctctaaaaaaggtgggaca
caaagtggctggggttctggtggaagaggcggtggcggcgatgtgggtcaaggaagtggt
ggagtcactgacgatgggaaatggggtacggcctctaagagagattcttcacaatcacaa
gccgacaatggatggtcaggaggtggtggtggttggtga
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integrated database retrieval system
