Populus trichocarpa (black cottonwood): 7464063
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Entry
7464063 CDS
T01077
Name
(RefSeq) aladin
KO
K14320
aladin
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
7464063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7464063
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
7464063
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_Aladin
Beta-prop_THOC3
ANAPC4_WD40
WD40_WDHD1_1st
WD40
Beta-prop_WDR5
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
WD40_Prp19
Beta-prop_RIG_2nd
eIF2A
Beta-prop_WDR3_1st
Tricorn_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_1st
Beta-prop_ELP1_1st
PD40
Sod_Fe_N
Motif
Other DBs
NCBI-GeneID:
7464063
NCBI-ProteinID:
XP_006373684
UniProt:
A9PFC1
LinkDB
All DBs
Position
16:1697837..1704148
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AA seq
449 aa
AA seq
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MPSFPLQGSVTICEINRTLIVAEALSDDRAKDAYGKILGMVFSPIPFQPEQLGSTGENQE
SEHQERNNGESVERKGLMKSLQYLVNESIKRMFYPNCVHLLPEIDLQGVSWHQHRHIIAF
ISGPNQVIVRDYEDSEGKDACVLSNGAQQDIRALEWRPNGGKSLSVACKGGICIWAASYP
GNPATVRPGAASSLGTLTRGSGGRWTLVDFLRSHSDEQTSAISWSPDGRYLASASCESSS
FTIWDVSQGLGTPIRRGLGGISLLKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSG
FVTGATWDPDGHIILIAFSGSLTLGSIHFSSKPPSLDAHLLPVDLPEITTMTGSEGIEKI
AWDASGERLAVSYKGGDDNYKGLVAIYDVRRTPLISASLVGFIRGPGDNPKPIAFSFHDK
FKQGPLLSVCWSSGFCCTYPLIFHSHSLP
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgccttcctttccactgcaaggctcagtcaccatctgcgaaatcaatcgaaccctaatt
gtagctgaagccttgtctgatgatcgagccaaggatgcttatggaaaaattctaggaatg
gtgttcagtccaattccgtttcaaccagagcagttgggatcgactggcgaaaatcaggaa
tctgaacaccaggaaagaaacaatggagagagtgttgagaggaaaggtttgatgaaatca
ttgcaataccttgttaacgagtcgatcaagcgcatgttttatcctaattgtgtacacttg
ttaccggagattgatcttcaaggagtgagctggcaccagcatagacatattattgcattt
atttcgggtccgaaccaggttatagttcgtgattatgaagattcagaagggaaggatgcc
tgtgttttaagcaatggggctcaacaagatattagggctcttgagtggagaccaaatggt
ggaaagtcactttctgtagcgtgcaagggtggaatctgcatatgggctgcttcttatcca
ggtaatccagccactgtgaggcctggtgctgcttcctccttgggaactcttactagaggc
tctggaggtcgatggactctagtggattttcttcgtagtcacagtgatgagcaaacaagt
gcaatatcatggagtcctgatggaagatatttggcatctgcatcatgtgagagctcttcg
ttcaccatatgggatgtctcacaaggtctggggacacccatacgacgtggattaggaggc
atatcgttactaaaatggtcacctactggagattacttttttgctgcaaaatttgatgga
acattttatctctgggagacaaacacatggacatctgaaccttggtcttcgactagtggc
tttgtcacgggagcaacatgggatcctgatgggcatataatattgattgctttctctgga
tctttaacattgggttccattcatttttcatcaaagcctccatctttagatgcacatctg
ttaccagttgatttaccagagataacaaccatgacgggcagtgagggaattgagaagata
gcttgggatgcttctggtgaaagactggctgtatcttataaaggaggggatgataattac
aaaggtcttgttgccatatatgatgttagaaggactcccctgatttctgcatcactagtt
ggatttattagagggcctggagacaatccaaagccaattgcattttcgtttcatgacaag
ttcaaacagggaccattgctttctgtgtgttggagcagtggattttgctgtacctatcct
ctaatatttcactcccatagtcttccataa
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