KEGG   Populus trichocarpa (black cottonwood): 7464076
Entry
7464076           CDS       T01077                                 
Name
(RefSeq) putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pop04121]
    7464076
   03400 DNA repair and recombination proteins [BR:pop03400]
    7464076
Enzymes [BR:pop01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     7464076
Ubiquitin system [BR:pop04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    7464076
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    7464076
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C HIRAN zf-RING_2 zf-C3HC4_3 DEAD zf-C3HC4_2 zf-C3HC4 zf-RING_5 zf-rbx1 Prok-RING_4 zf-RING_UBOX zf-ANAPC11 DSRM_MRPL44
Other DBs
NCBI-GeneID: 7464076
NCBI-ProteinID: XP_024443332
LinkDB
Position
16:complement(1957970..1961111)
AA seq 852 aa
MEAELKEEQEDALGLYMNLYARPDSSSFEDWKYSSSQQIRYKTSHVCSFITHIVGLRNHP
AIVFSDHELITLVRYQQCPRDKYAIKVFNSTSMEVGYLHDQASAALSPLIDAQMINLEGE
VTDSRTGDVKYSVPCLVRVFSKSTDLENVTQSIFGNTLSLTGEPRTNPETNEGKGGKEKG
RIEKLGTLEPPKEVIKAKLLDHQKVGLWWLVNKENSDELPPFWEMKDGLYVNVLTRHRTN
RKPEPLHGGIFADDYGTGKTLTLLSLIAFDKVGNVPEGTGEEDEGVSVCSCKKRGRVSEK
GTGEPNTHTLLDSNIKESSGGMADKSSSASVAKQTLIVCPSSVCSTWKNQLLEHTEKGSL
KLHKYYGDSKIKDVEELKKYDIVLTTYGAFANESFERWCPLLKIEWWRVILDEADVIKNA
NAMQSKAVSGLTARRRWAVTGAPIQNGSFDLFALIAFLRLDPLSKKSYWQSLLERPLAKK
DGNGFSRLQDLMAAISLRRTKDRVLVGRLRSKTVETVRFKIYGDERELYDQMAAESKKVV
RKLIATGRLNRSYASIRGAVIRLRQMCNDATPFSLYLKSLLPSDDIGDASEHPEFLRQLI
DVLRKDEDFDCAICYCPPTDAVITICKHVFCKRCIRTCLQRTRTSCPICRGRLSMSDLFS
APPESSDPEDPRKSTAIIPSKVSTLIKLLKESRDVRPASKSVVFTIFQKMLVLLEAPLKD
AGFNVLRLDALIDARRRGGIIKKFRSAGQNTVLLANVKVSGAGINLTAASEVYLLEPWWN
SELEEQAIDRVHQYGQEKNVIIVRLIVQDSIEERILMMQERKKQAIEAFGMQGPKERREV
SLEDLCSLLSLE
NT seq 2559 nt   +upstreamnt  +downstreamnt
atggaagcagaattaaaggaagaacaagaagacgcactgggcctatacatgaatctttat
gctcgtccagattcttcttcgtttgaagattggaaatattcttcttcacaacaaatccgg
tataaaaccagccatgtttgttcttttataacccatattgtgggcctcagaaaccaccct
gctatagtattcagtgaccatgaattgattacacttgtacgttatcaacaatgccctcgt
gataagtatgctataaaggttttcaattctacttctatggaggtgggttaccttcatgat
caagcttcggctgctttatctcctttaattgatgctcaaatgattaatcttgaaggtgag
gtgactgattcaagaactggagatgttaagtactctgttccttgtctcgttagagtcttt
tcaaagtcaactgacctagagaatgttacacaatcgatttttggaaatactttgagctta
actggtgagcctcgtacaaatcccgagacaaatgagggtaaggggggtaaagaaaagggt
aggatagagaaattggggactttagagccaccaaaggaggtgattaaagctaaacttctt
gatcatcaaaaggtgggtttgtggtggttggtgaataaagaaaactctgatgagttgccc
cctttttgggagatgaaagatgggctgtatgtgaatgttttaacaaggcatcgaacgaat
aggaaaccggagcctttgcatggcgggatttttgctgatgattatggaacgggcaaaact
ctaactttgctttctttgattgcttttgataaggttggcaatgtccctgaaggaacaggt
gaggaggatgagggagtgtctgtttgtagttgtaagaagagaggaagggtgagtgaaaag
ggtactggagaaccaaatacacatacccttttggatagcaatataaaagaaagttctggg
ggcatggctgataagtcttctagtgcttcggtggctaagcaaacattaattgtgtgcccg
tcttctgtgtgttcaacatggaaaaaccaactactggagcacacagaaaaaggatcgctc
aagctacacaagtattatggggatagcaagattaaggatgttgaggagcttaagaaatac
gatatagtattgaccacgtatggtgccttcgctaatgagtcctttgaaaggtggtgccct
ttgttgaagatcgagtggtggcgagtcattttggatgaggctgatgtgattaagaatgca
aatgccatgcaaagtaaggcagtctctggtttgaccgctaggaggaggtgggctgttaca
ggagcacccatccagaatggatcgtttgatttatttgccttgattgcatttttgcgatta
gatccactctctaaaaaaagctactggcaaagcctgttggagaggccacttgctaagaag
gatgggaatggattctcgcgactgcaggatttaatggcggccatttctttgcggagaacg
aaagacagggttttagttggccgattacgatcaaaaactgtagagacagttcgctttaaa
atttatggagacgaacgtgagctgtatgatcagatggcagcagaatccaagaaagttgtc
cgcaaactcattgctactggtagactaaacagaagctatgcatctatacgcggtgcagtc
atacgacttcgccagatgtgtaatgatgcaaccccgttctcgttgtatctcaaatcattg
ctaccttctgacgatataggagatgcatcagaacacccagaatttctccgacagttgatt
gatgtgcttcgcaaagatgaagattttgactgtgcaatttgttattgtccaccaaccgat
gctgtgatcacaatatgtaaacatgtattttgcaaaagatgcattcggacttgcctgcag
agaaccagaaccagctgcccaatttgtcgtggtcgtctttctatgtctgacctgttctca
gctcctcctgaatcttccgatcctgaagatcctagaaaatctacagcaataattccttcc
aaagtctcaactctcataaaactcctgaaggaatctagggacgtgagaccagccagtaaa
tcagtggtttttacaatattccagaagatgttggtactacttgaagcgccactgaaagac
gctggcttcaatgtattgcggttggatgcattaatagatgctagaaggagaggtggaata
atcaagaaatttcgatcagcaggacaaaacacagttctgcttgcgaacgttaaagtttca
ggagccggcataaacctcacagctgcttccgaagtctacttgttggagccgtggtggaac
tcagaattggaggaacaggcaatagaccgtgttcaccaatatggacaggagaagaatgta
ataattgttagattgattgttcaagatagcattgaagaaaggatattgatgatgcaggaa
aggaagaaacaggcaattgaagctttcggaatgcagggacccaaggaacgacgcgaggtt
agcttagaagacctctgtagcctcttatccttggaataa

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