KEGG   Populus trichocarpa (black cottonwood): 7464086
Entry
7464086           CDS       T01077                                 
Name
(RefSeq) putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pop04121]
    7464086
   03400 DNA repair and recombination proteins [BR:pop03400]
    7464086
Enzymes [BR:pop01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     7464086
Ubiquitin system [BR:pop04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    7464086
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    7464086
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C HIRAN DEAD zf-C3HC4_3 zf-C3HC4 ResIII zf-RING_2 zf-C3HC4_2 zf-RING_5 zf-ANAPC11 zf-RING_UBOX Peripla_BP_1 RING_XB3-XBAT31 DEAD_2 zf-RING_13 zf-RING_10 Prok-RING_4 zf-rbx1
Other DBs
NCBI-GeneID: 7464086
NCBI-ProteinID: XP_002323235
LinkDB
Position
16:complement(1966363..1969642)
AA seq 871 aa
MEEEEEEEYRILLAFGDRRYAPTEEYQQIRQEQLPLVMNLDAWKDPSTFQDWLSFGSRPI
RTETTLVCSFTTTIVGLRDAEINDHELLRFVRYRQCPYDEYAIKVLNSSSREMGYLSTPV
AQVLSPLVDLRKINLEGEVAFSKVRHDMSIPCAVRILAKAADVQGVRKEILPLDLLLHKL
PRASFGSYEDLGLKEKSRIEKLGTLEPPKKVIKAKLLDHQKEGLWWLVNKEKSDELPPFW
VVKDGLYLNVLTRHQTNRRPEPLHGGVFADDYGLGKTLTLLSLIAFDKVGNVTEGTGEED
RLEFVSRGKNWGRVSEKGTGEQKMHSLLDSNIKESSVRMAGESSSALVAKKTLVVCPSAV
CSTWENQLQEHTQKGSLKLYKYYGDNRTKDAEELMKYDIVLTTYSTLVADGCEQKRYPLM
KIEWWRVILDEAHVITKKANEQQSRELVKLTARRRWAVTGAPIQNGSFDLSSLMTFFRLD
PLSTEYYWQELLQKHLANGDEKGFVRLQELMATISLRRIKDKVLVGLPSKTIETVSFEFS
GEERELYNQMEADSKNVVAYFIAAYKLRSRYISVLFSVIQLRQLCNDSALCSMDLRSLLP
SDNIGDGSKHPELLRKMIDGLQDGEDIVCTVCLDPPTEATITICEHIFCKKCICHHLQQK
VTEQTCPNCRRPISFPDLFSAPPESSDPENPKKLSRTIPSKVSALIKLLKESRVVNSISK
SVVFSLFDKMLALMEEPLEDAGFNTLRLDASTDEIRQAEIIKKFSSAGADTVLLASLKTS
GTGINLTAASKVYLLEPWWNSAVEEQAINRVHQYGQQENVRIVRLIAQNSIEERILEMQE
RKKVANEAFGRQGRPSEQQEASIFDLCRLLF
NT seq 2616 nt   +upstreamnt  +downstreamnt
atggaagaagaagaagaagaagaatatcgtattctgcttgcttttggtgataggcgatat
gctccaacagaagaatatcaacaaattcgacaagaacaattaccacttgtcatgaatctt
gatgcttggaaagatccatctacttttcaagattggctatcttttggttcacgaccaatc
cggactgaaaccacccttgtttgttcttttaccaccactattgtaggccttagagatgca
gaaatcaatgatcatgaattgcttcgatttgtacgttatcgacaatgcccttatgatgag
tatgctataaaggttttaaattctagctctagagaaatggggtacctttctacaccagtt
gctcaggttttatctcctttagttgatcttcgaaaaattaatcttgaaggtgaggtggct
ttttcaaaagttagacatgacatgtctattccttgtgcagttagaatccttgcaaaggca
gctgatgtacagggtgttagaaaagagattttgccactcgacttgcttttacataaacta
cctcgtgcaagttttggttcatatgaggatttggggcttaaagaaaagagtaggattgag
aaattggggactttggagccaccaaagaaggtgattaaagctaaacttcttgatcatcaa
aaggaggggctgtggtggttggtgaataaagagaagtcggatgagttgccccctttttgg
gtggtgaaagatgggttgtatctgaatgttttgacgaggcatcaaacgaataggagacca
gagcctttgcatggtggggtttttgctgatgattatggattaggcaagactctgaccttg
ctttctttgattgcttttgataaggttggcaatgttactgaaggaacaggcgaggaggac
aggttagagtttgtttctcgtggtaagaattggggaagggtgagtgaaaagggtactgga
gaacaaaaaatgcatagccttttggatagtaatataaaagaaagttctgtgcgcatggcc
ggggagtcttctagtgctttggttgctaagaaaacactagtcgtgtgcccttctgctgtg
tgttcgacatgggaaaaccaactgcaggagcacactcaaaaaggttcactcaagctatac
aagtattatggggataacaggacgaaggatgcagaggagcttatgaaatatgatatagtg
ttgaccacatatagtaccttggttgctgatggatgtgagcaaaaacggtaccctttgatg
aagatcgagtggtggcgagttattttggatgaggctcatgtgattacgaagaaagcaaat
gaacagcaaagtcgggaacttgttaaattgaccgctaggaggaggtgggctgttacagga
gcacccatccagaatggatcgtttgatttatcttctctgatgacctttttccggttagat
ccactctctacagagtactactggcaagagttgttgcagaaacatcttgctaatggagat
gagaaagggttcgtccgactgcaggaattaatggcaaccatttctttgaggagaataaaa
gacaaggttttagttggattgccatctaaaactatagagacagtttccttcgaattttct
ggagaagaacgtgaactgtataatcagatggaagcagattccaagaatgttgttgcatat
tttattgcagcttataaactacgcagccgctatatatctgtgcttttttcagttattcaa
cttcggcagttatgtaatgactcggccttgtgctctatggatctcagatcattgctccct
tctgacaatattggagatggatccaaacatccggaattgcttcgaaagatgatcgatggg
cttcaagatggtgaagatattgtctgtacggtttgccttgatccaccaactgaggctaca
atcacaatctgtgagcacatattttgcaaaaagtgcatttgccatcacctacaacagaaa
gtaaccgaacaaacctgcccaaattgtcggcgtcctatttctttccctgacctgttctca
gcccctccagaatcttcggatcccgaaaaccctaaaaaactgtcaagaacaatcccttcc
aaagtctcagctctcataaaactcttgaaggaatctagggttgtaaactcaatcagtaaa
tcagtagttttttcactgtttgataagatgttggcattaatggaagagcctctggaagat
gctggcttcaatacattgcggttggatgcatcaacagatgaaataaggcaagctgaaata
atcaagaaatttagttcagcaggagcagacacggttctgcttgccagtctcaagacttca
ggaaccggcataaacctcacagctgcttccaaagtctacttgttggagccatggtggaac
tcagcggttgaggaacaggcaataaaccgtgttcatcaatacggacagcaggagaatgta
agaattgttagattgattgctcaaaatagcattgaagaaaggatattggagatgcaggaa
aggaagaaagtggccaatgaagcttttggaaggcaaggacgaccaagtgaacaacaggag
gctagcatatttgatctctgtcgcctcttattctga

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