Populus trichocarpa (black cottonwood): 7464596
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Entry
7464596 CDS
T01077
Name
(RefSeq) sm-like protein LSM36B
KO
K12625
U6 snRNA-associated Sm-like protein LSm6
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7464596
09123 Folding, sorting and degradation
03018 RNA degradation
7464596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7464596
03041 Spliceosome [BR:
pop03041
]
7464596
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
7464596
mRNA degradation factors
5'-3' decay
Lsm complex
7464596
Spliceosome [BR:
pop03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
7464596
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
7464596
NCBI-ProteinID:
XP_002316168
UniProt:
A9PAG8
A0A2K1YVZ7
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All DBs
Position
10:complement(17804452..17806475)
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AA seq
91 aa
AA seq
DB search
MSSGGEKGSTTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
GQLKNKYGDAFIRGNNVLYISTSKRTLADGA
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcggaggagagaagggatcgaccaccacgaaaacacccgctgatttcctcaaa
tcgatacgcggccgccctgttgtagtcaagctcaattctggagttgattatagaggtatt
ttagcttgtcttgatgggtacatgaacatagcaatggaacaaacagaggaatacgtaaat
ggccaactgaaaaacaaatatggtgatgctttcatccgaggaaataatgttctgtacatc
agcacttcaaagaggacacttgcagatggtgcatag
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