Populus trichocarpa (black cottonwood): 7464663
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Entry
7464663 CDS
T01077
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
7464663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7464663
03012 Translation factors [BR:
pop03012
]
7464663
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
7464663
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
7464663
Translation factors [BR:
pop03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
7464663
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
R3H
OB_NTP_bind
DEAD
Helicase_C
HA2_C
Ank_2
ATPase
Ank_5
nSTAND3
AAA_22
AAA_19
HA2_N
ResIII
Ank
Rad17
AAA_23
Ank_4
AAA_7
ABC_tran
AAA_16
PhoH
Motif
Other DBs
NCBI-GeneID:
7464663
NCBI-ProteinID:
XP_024457618
LinkDB
All DBs
Position
5:complement(21134562..21143774)
Genome browser
AA seq
1216 aa
AA seq
DB search
MNNQETKAQKGKMGKKNQRKAAQQQNPRVAEATLIRISKILERFRAAPDQVYTFEANLSN
YDRAVVHEVCKKMGMKSKSSGRGGQRRVSVYKNTKKLDDVKGKENLTHLTFSGESKMVLG
ELFSNYPPEEGGFGAELEGKHSGTAGKTREKKDDIFSKPSRKKAEIAKKVESFASRIEKD
VKLKQIVEGRSKLPIASFMDVITSTIESHQVVLISGETGCGKTTQVPQFLLDHMWGKGEA
CKIVCTQPRRISAISVSERISYERGENVGDSVGYKIRLESKGGKHSSIVFCTNGVLLRIL
VSKGITGSQNEANTAAKENVSDLTHIIVDEIHERDRFSDFMLAIIRDILPSHSHLRLILM
SATLDAERFSQYFGGCPIIRVPGFTYPVKAFHLEDVLSILNSRDDNHLDSAMPNVLDEGH
ELTEEDKAALDEAINLAWSNDEFDSLLDLVSSEGTPKVYDYQHSVSGLTPLMVFAGKGRV
GDVCMLLSLGANCNLQSKCGLTALKWAERENQEEAAEVIRKHAQNALADSSEQQQLLDKY
MATINPELIDVVLIEQLIKKICVDSKDGAILVFLPGWDDINRTRERLLANPFFKDGSKFI
IISLHSMVPSVEQKKVFKRPPQGCRKIILSTNISESAITIDDVVYVIDSGRMKEKSYDPY
NNVSTLQSSWVSKASAKQREGRAGRCQPGICYHLYSKLRESSLPDFQVPEIKRMPIEELC
LQVKLLDPHCKIEAFLQKTLDPPVPETIRNAVAVLLDIGALSVDETLTELGEKIGCLPVH
PLTSKMIFFAILMNCLDPALTLACASDYRDPFTLPMLPNEKKRAAAAKFELASLYGGHSD
QLAVLAAFECWNNAKNRGQEASFCSQYFISSSTMNMLQAMRKQLQRELIRKGFIPENVSS
CNTNAHVPGIVHAVLVAGLYPMVGRFLPPKNGKRVVETTSGAKVRLHPQSLNFKLSFWKS
NDYPLVIYDEITRGDGGMHIRNCTVIGPLPLLLLATEIVVAPAENDDEDDEEDDDDYDSA
DGAESDEDGMEIHGKLGTQQGERIMSSPDNSVMVVVDRWLYFGATALDVAQIYCLREQLS
AAILFKVTHPHKELPPALAAYTYTTACILSNDGLSGISLPGESVESLTSMVHATEIDESC
SGRRGISQNPNSFLSSLKNNTQQTAPRYHNARSPNQRPTLQGSTSAGHSMQGPSGPRGDS
YKRQRGNATRQHVRYL
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatcaagaaaccaaagcacagaaaggaaaaatgggtaagaagaaccagaggaaa
gcagcgcagcagcaaaaccctagagttgcagaagctactcttattcgaatctcgaaaatt
cttgaaaggttccgtgctgcccccgatcaagtttacacattcgaagctaacctatcaaac
tatgaccgtgctgtggtacatgaggtgtgcaagaaaatgggtatgaagtccaagagttct
gggcgcggggggcagcgacgtgtttctgtttacaagaacacaaagaagttagatgatgta
aaggggaaggaaaacctcactcatttgacattttcaggagaatcaaaaatggttttggga
gaactattttcaaactaccctcctgaagaaggaggctttggagcagagctagaaggaaaa
catagtggaactgctggtaaaacacgagagaaaaaagatgatatcttctctaaaccttct
agaaaaaaagcagaaattgcaaagaaggttgaatcatttgcttctagaatagaaaaggat
gtaaagttaaaacagattgttgaagggaggtctaagcttccgattgcatcctttatggat
gtcattacatccactatagaatctcaccaggttgttctcatttctggtgagactgggtgt
ggaaagacaacacaggtgccacaatttcttttggaccacatgtggggaaagggtgaagca
tgtaaaatagtttgtacacaacctcgacgtatctctgcaatatcagtttctgagagaatt
tcttatgaaagaggagaaaatgttggagatagcgttggatacaagattcgtttggaaagt
aaaggtgggaagcactcgtcaattgtgttctgtacaaatggggttctattgaggattctg
gtttccaagggcatcactgggtcgcagaatgaagctaatacagcggccaaggaaaatgtt
tccgacttaactcatattattgtggatgaaattcatgaaagggatcgcttctctgatttc
atgttggcaattattagggacatacttccttcacattctcatcttcggctgatattgatg
agtgccactcttgatgctgaacgattttcacaatattttggtggctgcccaattatccgc
gttcctgggttcacttatcctgtcaaagctttccatttggaggatgtgctttctatctta
aattccagagatgataatcatcttgattctgctatgccaaatgtcctggatgaaggtcat
gaattaacagaggaagataaagctgctttagatgaagctattaacttggcttggtcaaat
gatgaatttgattccctcctagatttggtttcttctgaaggaaccccaaaggtgtatgat
tatcagcattctgtgagtggactgacaccactgatggtctttgctggaaagggtagggtt
ggtgatgtttgcatgctcctctctttgggcgcaaactgcaatttacagtccaagtgtgga
ttaacagcactgaaatgggctgaacgagaaaaccaggaagaagctgctgaagtaataaga
aaacatgctcagaatgccttggctgattcctcggaacaacagcaacttcttgataaatat
atggcaacaattaatcctgaacttattgatgtggttcttatagagcagttaataaagaaa
atatgtgttgattccaaagatggtgctatccttgtttttcttccagggtgggatgatata
aatagaacgcgggagagattacttgcgaacccgttttttaaagatggttccaagtttatt
ataatctctctccattctatggttccatctgtggagcaaaagaaggtattcaaacgccca
cctcagggttgccgaaaaatcattctttcaactaatatttctgaaagtgccattactatt
gatgatgtggtatatgttatagatagtggacgcatgaaagaaaaaagttacgatccttat
aacaatgtatcaactcttcaatcatcctgggtatctaaagcaagtgcaaagcaacgagag
ggacgtgcagggcgctgtcagcctggaatatgttatcatctatattcaaaactcagagaa
tcttctttgccagatttccaagttcctgaaatcaagagaatgccaattgaggaactctgt
ttacaggtgaagttgcttgatccccattgcaagatagaagctttcttgcaaaagacattg
gaccctccggttccagaaaccatacgcaatgctgttgctgttcttctagatattggggct
ttatcagtggatgaaacattgacagaactgggagagaagatcggttgcctacctgttcat
ccattgacgagcaagatgattttctttgccatattgatgaattgccttgacccagctttg
acactggcatgtgcatctgattatagagatccatttacccttcctatgctgcctaatgaa
aagaagagagctgctgctgctaagtttgagcttgcttcattgtatggtgggcacagtgat
cagctagcagttttagcagcttttgagtgctggaacaatgcgaagaataggggtcaagaa
gcatcgttttgttcacaatacttcatctcttcaagcaccatgaatatgctgcaagccatg
cgtaaacagctccagagagaactaatacgcaaggggtttattccagaaaatgtctctagt
tgtaatacaaatgcgcatgttccaggtatagtccatgctgtccttgtggctggtctgtat
ccaatggtggggaggttccttccacctaaaaatggaaagcgtgttgtggagactactagc
ggtgctaaagttcggttgcaccctcagtcccttaattttaaattatcattttggaaatct
aatgactacccattggttatatatgatgagataactcgaggagatgggggtatgcacata
aggaactgtactgtcattggtccactgccattattgctactcgcaacagagattgtagtc
gctcctgcagagaatgatgacgaggatgatgaggaggacgacgacgactatgatagtgca
gatggagctgaaagtgatgaagatggaatggagatacatggcaaattaggcactcaacag
ggtgagaggatcatgtcctctcccgataattcagttatggttgttgtggatcggtggctt
tattttggagcaacagcccttgatgttgctcaaatttactgcttgagagagcaattatct
gcagcaatcttattcaaagtgacacatcctcacaaagaacttcctcctgctcttgcggcc
tatacatatactacggcttgtattctgtccaatgatgggctatctgggatttcattacca
ggagaatccgtggagtcactgacttcaatggtccatgcaactgagattgacgagtcctgt
tctggaaggagagggatcagtcagaatccaaatagcttccttagctcgctgaagaacaac
acacagcagaccgctcctcgttatcacaatgctaggagtcctaatcaaaggcctacattg
caaggctccacatcagctgggcacagtatgcaagggccatcgggtccaaggggagattcc
tataagcggcagcgtggaaatgcaaccagacagcacgtacgctatttgtag
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integrated database retrieval system
