Populus trichocarpa (black cottonwood): 7464763
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Entry
7464763 CDS
T01077
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X2
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
7464763
Enzymes [BR:
pop01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
7464763
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
RhgB_N
V-set_CD47
Motif
Other DBs
NCBI-GeneID:
7464763
NCBI-ProteinID:
XP_002319997
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Position
14:353574..359909
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AA seq
675 aa
AA seq
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MDKVGASLLRWLALLIWFFFIVKLTAASRKIFQSENGKSLGVRLHKHHHRMVMDNGLVQV
TLSSPGGDITGIQYNGIHNVLETRNREGNRGYWDVVWNLPGNHIAYDRLKGTDFNVIMED
EDQVELSFKKSWNFTHGGSSAPLNVDKRYIMRRGSSGVYLYAILERLEGWPDMDMDQIRI
VFKLQNDKFHFMAISDDRQRIMPMPRDRISGEPLAYPEAVLLTNPTNPQLGGEVDDKYHY
SCENKDNRVHGWISENPTVGFWMITASDEFRAGGPLKQDLTSHVGPTVLSMFTSTHYSGK
DLNTKYRNGKPWKKVLGPVFVYLNSISSLEDPTTLWEDAKDQMSIEVNSWPYNFPQSEDF
PSSDRRGTVSGQLLVGDKYISDKPMWASYAYVGLAAPGGVGSWERDAMGYQFWVQANEEG
HFLIENIRAGHYNLYAWVPGIVGDCRYDVIIHIQPGCDVKLGVLVYEPPRNGPTLWEIGI
PDRTAAEFFVPDTYPTLMNKLFINQSTHKFRQYGLWERYSDLYPKHDLIYTTGISNYHQD
WFFAQVPRNMGNHTYQATTWQIKFEIENATPRTGNYTLQVALASASASELQVRFNDRRAK
RPHFRTRLIGRDNAIARHGIHGLYWFYSINVPSRLLRQGNNTVYLTQSRSKSPVGGIMYD
YIRLEGPPETGPSVE
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggacaaagtcggtgcttctcttttgaggtggttagcattgttgatttggttcttcttc
attgtcaagctcaccgctgcttcaaggaaaattttccagagtgaaaacggtaaatctctt
ggggtgcggctgcataagcatcatcatcggatggtgatggataatggccttgttcaagtc
actttgtctagtccgggcggtgatatcaccggaatacagtacaacggaatccataatgta
cttgaaaccaggaacagggaaggcaaccgagggtattgggacgttgtctggaacttgcct
ggaaatcatatagcttacgacagattgaaaggaacagattttaacgttataatggaagat
gaagaccaagtagaactctcattcaagaagtcttggaatttcacacatggtggctcctca
gcccccctgaacgtagacaaaaggtatataatgcgacggggcagctcaggggtttacttg
tatgccatattagaacgcctagagggatggcctgacatggacatggatcaaattagaatc
gttttcaagctccaaaatgacaagtttcacttcatggcaatatctgacgacaggcaaagg
atcatgccaatgcctcgagacagaatcagtggggagcctcttgcatatccagaagctgtt
ctcctgaccaatccaactaatccacagcttggaggagaggtggacgacaagtatcattat
tcatgtgagaacaaagacaacagggtacatggttggatatcagaaaatccaacggtggga
ttttggatgatcacagcaagtgatgagttccgggccggtggtcccctgaaacaagacctc
acatctcatgtcggccccaccgtcctctctatgtttaccagcactcattacagtgggaag
gacttgaacacaaaatatcgaaacggaaagccatggaaaaaggttctaggacctgtattt
gtctatctcaactccatctcctcccttgaagatcccacgacactatgggaagatgctaag
gatcagatgtctatagaagtcaacagctggccttacaatttcccccagtcagaagatttc
cctagctccgatcgacgaggaactgtttctggtcaattactagttggtgacaagtacatc
agtgacaaaccaatgtgggcgagctatgcctatgtgggcttggcagcaccaggaggggtg
ggttcgtgggaaagagacgccatggggtatcaattctgggttcaagccaatgaggagggt
catttcttaatagaaaacattagagctgggcactataatctgtatgcctgggttcccggc
attgttggggattgccgatatgatgttattatccacatccaaccaggatgtgatgtgaaa
ttgggtgttcttgtgtacgagcctccaagaaatggtccaaccctttgggaaataggaatc
cctgaccgcactgctgccgaattctttgtgcccgacacatacccgacgctcatgaacaaa
ttgttcatcaaccaatcgactcacaagtttaggcagtatggactatgggaaaggtactca
gatttgtatcctaagcatgaccttatttacactactggcatcagtaattatcatcaagat
tggttctttgctcaggttcccaggaacatgggaaatcacacatatcaagccacgacatgg
cagatcaaattcgagatagaaaatgccaccccgaggactggaaactatacactccaagtg
gccttggcatcagcctccgcttctgaactacaggttcggttcaatgacagacgagccaaa
agacctcatttcagaacaaggctaataggaagggacaatgcaattgcccggcatggaatt
catggtctgtactggttttatagcattaacgtgccaagccgtctgcttcgccaaggaaac
aacactgtatatctcactcagtcaagaagcaaatcccctgttggaggaattatgtatgat
tacattcgtttagaagggcctccagaaacgggtccgagtgtagaatga
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