Populus trichocarpa (black cottonwood): 7464861
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Entry
7464861 CDS
T01077
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
7464861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pop03400
]
7464861
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
7464861
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
DNA-PKcs_N
Motif
Other DBs
NCBI-GeneID:
7464861
NCBI-ProteinID:
XP_024440108
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Position
14:complement(4411363..4416965)
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AA seq
682 aa
AA seq
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MARNKEGLVLLLDVGPTMYSVLPEIKKVCSMLIQKKLIYGKFDEVGVVVFGTQETDNELT
KEVGGYEHVVVLRNIKVVDGDLVDAFQELPRGNFDGDYLDAIVVGMDMLIKKYQATNKGK
KRLCLITNALCPIKDSCEGTKEDQVNTIAAQMSAHGMKMESVIVRGRLCGGGDQRIMAEN
DRLLNLFSEKTSARAVYVESPTALLGAVKTRNISPVTIFRGDLELGSKMKIKVWVYKKTS
EEKFPTLKKYSDKAPPTDRFATHEVKVDYEYKSVEDPNKVVPPEQRIKGYRYGPQVVPIS
SAEWDAVKFKPEKSVKLLGFTDASNIMRHYYMKDVNVFIPEPGNARAALAVSALARAMKE
MNKVAILRCVWRQGQGSVVVGVLTPNISEKDSTPDSFYFNVLPFAEDVREFQFPSFSSFP
ASWQPNEQQQEAADNLVKMLDLAPSAKQEALLPDFTPNPVLERFYRHLELKSKHPDAAVP
PLDETLKTITEADPDLLSEKKNVMDAFYKSFELKENPRLKKSSKRLLEKKPSGSDEDYQD
TTNALVVKPVKVEKIGDSSPVQDFEAMMSCRDSPDWVSKAIQDMKNKIYSLVENSYDGDN
HGKAMECLLALRKGCILEQEPKQFNDFLHHLFNVRQEKKFRNFCESLIPKGLTLISKSEA
IDSEVTDDEARNFLVKKELKFE
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggctcgaaacaaggaaggattggtgctgttactcgatgtcggtccaacaatgtacagt
gttcttcctgaaattaaaaaagtttgctccatgcttattcagaaaaagttgatttatgga
aaattcgatgaggttggagttgttgttttcgggactcaagagactgacaatgagctgacg
aaagaagtaggtgggtacgagcatgttgtcgtcttacgaaatatcaaagttgttgatgga
gatcttgttgatgcatttcaagagctccctcgaggaaactttgatggagattatcttgat
gctattgttgttggaatggatatgctgataaagaagtatcaagcaacaaacaaaggaaaa
aagcgtctgtgtcttattacaaatgcactgtgccctattaaagattcatgtgaagggacc
aaggaagatcaagtgaacactatcgcggctcaaatgagtgcacatggaatgaaaatggaa
agtgttattgtgaggggaagattatgcgggggtggagaccagagaataatggctgaaaat
gatcgactgctgaatcttttttcagagaaaacatctgccagggcagtgtatgttgagagt
ccaactgcattgttaggtgcagttaaaactcgaaatatatctccagtaacaatattcaga
ggtgatcttgaacttgggtccaagatgaagattaaggtgtgggtctacaaaaaaacctca
gaggagaaatttcccactctgaagaaatattctgataaagcgcctccaactgacagattt
gcgacgcatgaagtcaaagtagattatgagtacaaaagtgtggaagatcctaataaggtt
gttcctccagaacaaagaattaagggttacagatatggaccacaagttgttccaatatca
tctgctgagtgggatgctgtcaaattcaaaccagaaaaaagcgtgaagcttctaggattt
actgatgcttcaaacataatgcggcactactacatgaaagatgtcaacgtctttattcct
gaaccaggcaatgcaagggctgctcttgcagtttctgctttagctagagcaatgaaggaa
atgaataaggttgcaattttgcgatgtgtctggagacaaggacaagggagtgttgttgtg
ggggttctgacacccaacatatctgagaaagacagcactcctgattcattttacttcaat
gtacttccttttgccgaggatgtccgggaatttcaatttccatctttcagcagttttcca
gcttcatggcagccgaatgagcagcagcaagaggccgcagataaccttgtaaagatgctt
gaccttgcaccatctgccaaacaggaagctctactgcctgatttcacaccaaatcctgtt
ctggagcggttttatcgtcatcttgaattaaagtcaaagcatccagatgcagctgtgcct
ccactggatgaaactctcaaaacaataactgaagctgatccagatcttctttctgaaaag
aaaaatgtaatggatgcattttataagagctttgaactcaaggagaatccaaggctaaag
aaatcaagcaagcggttattggagaaaaaaccctctggttctgatgaggattatcaagat
acaaccaatgctctagttgtcaagcctgttaaggttgaaaaaattggggattcaagtcca
gttcaagattttgaagcgatgatgtcatgcagagatagtccagattgggttagtaaagca
attcaggatatgaaaaataaaatatatagcctggttgagaattcctatgatggggataat
catggtaaagcaatggaatgtctacttgcccttcgcaaaggttgcatccttgagcaagaa
cctaaacagttcaatgatttccttcaccatcttttcaatgtccgccaagagaaaaagttt
cgcaatttctgtgaatccctcatacccaaaggactcactttgatttcaaagtcagaagcc
atagacagtgaggttacagatgatgaagctagaaactttctggttaaaaaagagctgaaa
tttgagtga
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