Populus trichocarpa (black cottonwood): 7465198
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Entry
7465198 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7465198 isoform X1
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
7465198
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7465198
03400 DNA repair and recombination proteins [BR:
pop03400
]
7465198
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
7465198
Messenger RNA biogenesis [BR:
pop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
7465198
DNA repair and recombination proteins [BR:
pop03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
7465198
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HTH_40
RecQ_Zn_bind
HRDC
ResIII
Cas3-like_C_2
Helicase_Sgs1
Utp25_C
Motif
Other DBs
NCBI-GeneID:
7465198
NCBI-ProteinID:
XP_024439942
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All DBs
Position
13:15494678..15503665
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AA seq
912 aa
AA seq
DB search
MLSTLKQYFGYANFRAYQKEVIDQILDKRDCLAVMATGSGKSLCYQVPPLLLEKTAVVIS
PLISLMQDQVMSLKQRGIRAEFLGSAQTDGSVHTKAQTGHFHLLFMTPEKACSTPLSFWL
KLLEAGICLFAVDEAHCISEWGHDFRVEYKQLYKLRDVLLEVPFVALTATATEKVRIDII
NSLKMNNPYVAVGSFDRKNLFYGVKHFNRSLQFVDELVQEISKYARKAGSTIIYCTTIKD
VEQIHKSLKEAGIKTGIYHGQMSSKAREESHRSFVRDELLVMVATIAFGMGIDKPNIRQV
IHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRADFAKADFYCGGLRTENQRRAVMESL
MAAQHYCSLTTCRRKFLLSYFGEKFSAEKCGNCDNCMVSKRERDMSKESFLLMSCIQSCE
GNWGLNMPVDVLRGSRAKKILNAHFDKLPFHGLGKDYSSNWWKSLAYQLISHGYLMETFR
DTYKFVRVSPKGKQYIQSARPDHQPALILPLTDEMVEDEEQQCTTGGVGELNSMATLECE
QLSEAEARIFHMLLDERTKLAKSIGTAPYAVCGDQTIKKIALVRPSTKARLANIDGVNQH
LVVRHGDYLLQTIRDLSQELNLSLDGGANLQTANTRKANQVPNHKKLTPAKLDAWKMWHE
NGLPIQKIANFPGRSAPIKEGSVVEYLLEAAQGGLQIEWTRLCGEVGLSRERLSEIEGAI
SKVGSREKLKPIKDELPEDISYAHIKICLAMQNCGFLPEVTPPSHLDTSKADEFVESESG
MVSTGTSCLDTVHEVEISVKIMATHCCSDHNEETSSLMVRIAQDQEVHPINDANVLSPRK
RQKVDIPEESTTALEATESSILDWLKNYDEGVFIRDILEHFNGSKEELVIDLLSSLESDF
VIFKKNDLYMLL
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgctatccacactcaagcaatactttgggtatgcgaatttcagggcttaccagaaggag
gtgatcgaccagattctggacaagagggactgtttagcggtcatggccactggcagcgga
aagtctttatgctaccaggttcctcctttgcttcttgaaaagactgccgtagtcataagc
ccccttatttctttgatgcaagatcaggttatgagtttgaaacaacgcggaatcagagct
gagtttcttggaagtgctcagactgatggttccgtccataccaaagctcagactggtcat
tttcatttattgttcatgacacctgaaaaggcttgctccacccctctcagcttctggttg
aaattgctagaggcaggaatttgtctctttgctgttgatgaagctcattgcatctcagag
tggggccatgatttcagggtggaatacaagcagttatacaagttacgtgatgttcttttg
gaagttccatttgttgcattaactgcaactgctactgaaaaggttagaattgacatcatc
aattctttgaagatgaacaatccttatgttgctgttggctcatttgatcgtaaaaatctc
ttctacggtgtcaaacatttcaatcgcagtcttcaatttgtggatgagcttgtgcaagaa
atatcaaaatatgcaaggaaggccgggtcaactattatttactgtacaacaataaaagat
gttgagcagattcacaagtcactgaaagaggcaggaattaagactggaatatatcatggt
caaatgagcagcaaagctcgtgaggagtcccacagatcgtttgtaagagatgaactgctg
gtcatggttgctactattgcctttggcatgggcattgataagccaaacataaggcaagtg
atacattatggttgtccaaagagtatagaatcttattatcaggaaagtgggcgatgtggg
agagatggtattccttctgtctgttggctatattatacaagagctgactttgcaaaagct
gacttctattgtggaggattaagaacagaaaatcaaagaagggctgttatggagtcattg
atggctgcgcaacactactgctcactaaccacatgcagaagaaagttcttgctcagttat
ttcggggaaaaattttcagctgagaaatgtggaaattgtgataactgcatggtctcaaag
agggagcgtgacatgtccaaggaatcatttcttttaatgtcttgcattcaatcgtgtgag
ggtaactggggcctcaatatgcctgtagatgttcttcgtggatccagggcaaaaaaaatt
cttaatgctcattttgacaagctaccatttcatggacttgggaaagactactcgtcaaat
tggtggaaatcactggcttaccaattaatttctcacggttatctgatggagacttttaga
gatacatataaatttgtaagagtaagtccaaaagggaagcaatatattcagtctgctaga
cctgatcaccaaccagctctaatattaccattgactgatgaaatggttgaggatgaagaa
caacaatgcacaacaggcggggttggagagttgaatagtatggcaactttagaatgtgaa
caattgtcagaggctgaagcacgaatctttcacatgcttttggatgagagaaccaagctt
gctaaaagcattgggactgctccatatgctgtatgtggtgatcaaacaataaaaaaaatt
gctttggtgagaccatctaccaaagcaaggttggcaaacattgatggtgtcaaccagcat
cttgttgtgagacatggcgattatcttcttcaaactattagggatctgtcacaagaactt
aacctttccttggacgggggagcaaacttgcagactgctaatacgagaaaagccaatcaa
gtaccaaatcacaagaaattaaccccagctaagttagatgcttggaaaatgtggcatgaa
aatggtctaccaattcaaaaaatcgcgaatttccctggtagatcagctcctataaaagaa
ggatctgtagttgaatatcttctagaagctgcacaaggaggactccagattgaatggact
agattgtgtggtgaagttggactttcacgtgaaagattgtcagaaattgagggtgcaatc
tcaaaggttggctctagggaaaagttgaagcccattaaagatgaattaccagaagatata
agctacgcacacatcaagatctgtctggcaatgcaaaactgtgggtttttacctgaagtg
actccacctagccaccttgacacatcgaaggctgatgaatttgtggaaagtgagtctgga
atggtttctactggtaccagctgcttggacacggttcatgaggttgaaatatcagtcaag
attatggctactcattgttgctcagatcataatgaagaaacttcctcccttatggtcaga
attgcacaggaccaagaggttcatcctatcaatgatgcaaatgtactttccccaaggaaa
cgtcagaaggtagatatacctgaagaaagcacaactgcattggaagctacggagagttcc
atactggattggctcaagaactatgatgaaggggttttcattagagatattttggagcat
ttcaacgggtcaaaagaggaattggtgattgatttactaagtagccttgaaagcgacttc
gtaatatttaagaagaatgatctgtatatgcttttgtaa
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