Populus trichocarpa (black cottonwood): 7465345
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Entry
7465345 CDS
T01077
Name
(RefSeq) E3 ubiquitin-protein ligase complex SLX5-SLX8 subunit SLX8 isoform X2
KO
K22651
E3 ubiquitin-protein ligase RNF4 [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7465345
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
7465345
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
7465345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Drf_FH1
zf-rbx1
zf-RING_4
Sina_RING
RING_XB3-XBAT31
zf-Nse
zf-RING_10
Prok-RING_4
zf-RING_11
TRAF3_RING
Motif
Other DBs
NCBI-GeneID:
7465345
NCBI-ProteinID:
XP_002304583
UniProt:
B9GY45
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All DBs
Position
3:complement(16227857..16230148)
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AA seq
242 aa
AA seq
DB search
MDLLENFDSNMVFMEKAENTMDLLGSVDLLVENLWEAERSYYQHFDLNFPVPVENNIPPC
GPWFPAQPQIFQAEAYGLTRQRGTARDVEVIDDDIAIISPNTFDQARKKARRNPDAEVRE
NINMANQAGSVPQLPGSSQAVPPSQFPGSSQTVPPPQLSGLSLTVPPPHFSGLSQTAPPP
PAPMFCCPICMDEMKEATSTKCGHVFCKSCIEKALAVQKKCPTCRMKCIAKSIFRIFLPA
FL
NT seq
729 nt
NT seq
+upstream
nt +downstream
nt
atggatttactggagaattttgacagcaacatggtttttatggagaaagcagaaaacact
atggatttactggggagtgtggatcttctggttgaaaatttgtgggaagccgagagaagt
tactatcagcactttgatctcaactttccagttcctgttgagaacaatatacctccctgt
ggcccgtggtttcctgcccaaccacagatttttcaagctgaagcatatggattgacacga
caacgtggaactgctcgagatgttgaggtcattgatgatgatattgctataatctccccc
aacacatttgatcaagccaggaagaaagctaggagaaatcctgatgcagaagtaagggaa
aatataaatatggccaatcaggctgggagtgtgccccaactccctggatcatcccaggct
gtgccaccatcccagttccctggatcgtcccagactgtgccaccgccccaactttctgga
ttgtccctgacggtgccaccgcctcatttttcaggattgtcccaaactgcaccgccgcca
ccagcaccaatgttttgttgcccgatttgtatggacgagatgaaagaagcaacatcgaca
aaatgtggtcatgttttctgcaagagttgcattgaaaaagcactggctgtccagaagaag
tgccctacttgcaggatgaaatgtatagcgaaatccatcttcaggatctttcttcctgca
tttctttaa
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integrated database retrieval system