KEGG   Populus trichocarpa (black cottonwood): 7465345
Entry
7465345           CDS       T01077                                 
Name
(RefSeq) E3 ubiquitin-protein ligase complex SLX5-SLX8 subunit SLX8 isoform X2
  KO
K22651  E3 ubiquitin-protein ligase RNF4 [EC:2.3.2.27]
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pop04121]
    7465345
Enzymes [BR:pop01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     7465345
Ubiquitin system [BR:pop04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    7465345
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-C3HC4_3 zf-C3HC4_4 zf-RING_5 Drf_FH1 zf-rbx1 zf-RING_4 Sina_RING RING_XB3-XBAT31 zf-Nse zf-RING_10 Prok-RING_4 zf-RING_11 TRAF3_RING
Other DBs
NCBI-GeneID: 7465345
NCBI-ProteinID: XP_002304583
UniProt: B9GY45
LinkDB
Position
3:complement(16227857..16230148)
AA seq 242 aa
MDLLENFDSNMVFMEKAENTMDLLGSVDLLVENLWEAERSYYQHFDLNFPVPVENNIPPC
GPWFPAQPQIFQAEAYGLTRQRGTARDVEVIDDDIAIISPNTFDQARKKARRNPDAEVRE
NINMANQAGSVPQLPGSSQAVPPSQFPGSSQTVPPPQLSGLSLTVPPPHFSGLSQTAPPP
PAPMFCCPICMDEMKEATSTKCGHVFCKSCIEKALAVQKKCPTCRMKCIAKSIFRIFLPA
FL
NT seq 729 nt   +upstreamnt  +downstreamnt
atggatttactggagaattttgacagcaacatggtttttatggagaaagcagaaaacact
atggatttactggggagtgtggatcttctggttgaaaatttgtgggaagccgagagaagt
tactatcagcactttgatctcaactttccagttcctgttgagaacaatatacctccctgt
ggcccgtggtttcctgcccaaccacagatttttcaagctgaagcatatggattgacacga
caacgtggaactgctcgagatgttgaggtcattgatgatgatattgctataatctccccc
aacacatttgatcaagccaggaagaaagctaggagaaatcctgatgcagaagtaagggaa
aatataaatatggccaatcaggctgggagtgtgccccaactccctggatcatcccaggct
gtgccaccatcccagttccctggatcgtcccagactgtgccaccgccccaactttctgga
ttgtccctgacggtgccaccgcctcatttttcaggattgtcccaaactgcaccgccgcca
ccagcaccaatgttttgttgcccgatttgtatggacgagatgaaagaagcaacatcgaca
aaatgtggtcatgttttctgcaagagttgcattgaaaaagcactggctgtccagaagaag
tgccctacttgcaggatgaaatgtatagcgaaatccatcttcaggatctttcttcctgca
tttctttaa

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