Populus trichocarpa (black cottonwood): 7465402
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Entry
7465402 CDS
T01077
Name
(RefSeq) heparanase-like protein 3
KO
K07964
heparanase [EC:
3.2.1.166
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00531
Glycosaminoglycan degradation
pop01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00531 Glycosaminoglycan degradation
7465402
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pop00536
]
7465402
Enzymes [BR:
pop01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.166 heparanase
7465402
Glycosaminoglycan binding proteins [BR:
pop00536
]
Heparan sulfate / Heparin
Enzymes
7465402
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Glyco_hydro_79n
Pertactin
DUF7347
Motif
Other DBs
NCBI-GeneID:
7465402
NCBI-ProteinID:
XP_002324878
LinkDB
All DBs
Position
18:1788382..1792233
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AA seq
561 aa
AA seq
DB search
MATLNADRETNTRHCFYQMGSLFTVCVFCACFYWLGATSKSAASQRTGGPRNIVEGTVFI
NGTAPIGTTDHDFICATLDWWPPDKCDYGTCSWGKASFLNLDLTNPILLNAIKAFSPLKI
RMGGTLQDKVTYERLGEPCPTFVKSSPEMFGFSQGCLPMSRWDELNNFFKQAGAVVLFGL
NALSGRTTAADGSAVGAWNSSDAEFLMRYSVNKGYTIHGWELGNEVSGKGIGTRIAADQY
ASDINNLQMIVQTIYAGFEVKPLVLAPGGFFDANWFTQFINKTPRSLQVVTHHIYNLGPG
VDDHLIDKILNPSYLDGGSQPFRSLQGILKTSGTPAVAWVGEAGGAYNSGHNRVTNAFVF
SFWYLDQLGMASSYDTKTYCRQTLIGGNYGLLNTGTFVPNPDYYSALLWHRLMGRNVLST
TFSGTNNIRAYAHCAKASKGITLLLINLDGNTTVEVHVSTENVTGNGTLVTQQQNQTKFS
GMSKGSNIDVSTREEYHLTALNGDLHSQTVLLNGNILSVNSSGSVPPLEPIETSQSDPIT
VAPFSIVFAHIANSTVPACEY
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccttaaatgctgatagagagacaaacacaaggcattgtttttatcagatgggc
agtttgttcactgtttgcgttttctgtgcttgtttctactggctgggtgcaacctcaaaa
tctgcggcttcacagagaacaggagggcctagaaatattgttgaaggcactgtttttatc
aatggaacagctccaattgggacaacagaccatgattttatttgtgctactttggactgg
tggcctcccgataaatgtgactatggaacttgtagctggggcaaagcttcttttcttaac
ctggatcttaccaacccaatattgttgaatgcaatcaaagccttttctcctctgaaaatc
agaatggggggcactttacaagataaagtcacatatgaaagactaggtgaaccttgtcca
acatttgtcaaaagtagtccagaaatgttcggcttttcccaaggttgcttgccaatgtct
cggtgggatgaattgaacaacttcttcaaacaagccggggctgttgttcttttcgggtta
aatgcgttgagtggcaggacaacagcggcagatggttctgctgtaggtgcttggaattca
agtgatgctgaatttctcatgcgatattctgttaacaaggggtacaccattcacggttgg
gagcttggaaatgaagtaagtgggaaaggaattggaacaagaattgcagcagatcaatat
gcatctgacataaacaatctgcagatgatagtgcaaactatttatgcaggttttgaagtt
aagccactagtcctagcaccaggagggttctttgatgcaaactggttcacacaatttata
aacaaaacacctagatctctccaagtagtcacccaccacatttataaccttggtccaggt
gttgatgatcacctaattgataagatattgaatccatcatacctcgacggaggttcccaa
ccattcagaagtcttcaggggattttgaagacttcagggactccagctgttgcttgggtt
ggtgaggcaggaggtgcttacaacagtggccataatcgtgtcacaaatgcatttgtgttt
agtttctggtacttggaccagctaggcatggcatcgtcatatgacacaaaaacatattgt
agacagacattgattggtggaaattatggccttcttaacactggcacctttgtccctaat
cctgattattacagtgctcttctgtggcaccgtttgatgggaagaaatgttctgtcaaca
actttctctgggactaacaacatacgcgcttatgctcactgtgcaaaagcatcgaaagga
attacattgctgttgatcaacctcgatggaaacactactgttgaagtccatgtttcaact
gaaaatgttaccggcaatggaactttggtaacgcaacaacaaaatcaaacaaagttttct
gggatgtctaagggttcaaatatcgatgtcagtacaagagaggaatatcatttaacggcc
ctgaatggtgatttacacagtcaaacagtgctcctaaatgggaacatactttctgtaaat
tcatctgggagtgtccctcctttggaaccaattgaaaccagccagtccgatccaataact
gttgcccctttctctattgtatttgctcacattgctaattccactgttcctgcttgtgag
tattag
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