Populus trichocarpa (black cottonwood): 7465413
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Entry
7465413 CDS
T01077
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X2
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
7465413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7465413
03036 Chromosome and associated proteins [BR:
pop03036
]
7465413
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
7465413
Coactivators
SAGA/TFTC/STAGA complex
7465413
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
7465413
STAGA complex
7465413
TFTC complex
7465413
SAGA complex
7465413
SLIK complex
7465413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_EML
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SCAP
Ge1_WD40
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Cytochrom_D1
WD40_like
RAB3GAP2_N
WD_LRWD1
PROPPIN
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
7465413
NCBI-ProteinID:
XP_002324907
LinkDB
All DBs
Position
18:1418109..1424392
Genome browser
AA seq
675 aa
AA seq
DB search
MDEEAVVKFVETYLKKKGFKQAELAFHEEIQQQHQQQNNSNNAISIHSDPDLSSLLHSLS
QPEDSPARYQDEYSKLRSWAYSSLDLYKHELLRVLYPVFVHCYMDIVAKGHIQEARNFFN
SFREDHEMMHSRDLQKLEGVLSPSHLEEMEFAHTLRQSKVNIKICQYSNELLMQYLRKSK
WTIILGIVNEHINFQVSPGQPISISDDPDAVTLIGSSQDAANQINKKEIHWGLLEDSLEE
RLEKTGGFLSDTEKTEGETKEGDMDENKKRSIDGGKQGASIKKSKKDKAASATTKIARPE
ANTVSAAPRVKPELPLPVMPTEVEQSILEDLRNRVQLSSVTLPSVSFYTFINTHNGLNCS
SISHDGSLIAGGFSDSSLKVWDMAKLGHQAGNSILQGENDTAPSEQGQSPNSGKRSYTLF
QGHSGPVHSATFSPLGDFILSSSADTTVRLWSTKLNANLVCYKGHNYPVWDVQFSPVGQY
FASASHDRTARIWSMDRIQPLRIMAGHLSDVDCLQWHANCNYIATGSSDKTVRLWDVQSG
ECVRIFIGHRSMILSLAMSPDGRYMASADEDGTIMMWDLSSGRCISPLIGHNSCVWSLAF
SCEGSLLASGSADCTVKLWDVTTSTKAPRTEESKSGNTNRLRLLKTLPTKSTPVYTLRFS
RRNLLFAAGALAKSQ
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaagcagtagtgaaatttgtggagacatatttaaagaagaaagggttcaag
caagcagagctcgctttccatgaagaaatccagcagcagcatcaacaacaaaacaacagc
aataatgctatcagtatccactcggatcctgatctctcttccctccttcactccctctct
caaccagaggatagtccggcacgttaccaagatgagtatagtaaactaaggtcgtgggct
tatagttcgcttgatctgtacaagcatgagttgcttcgtgtgctttatccagtatttgtc
cattgttatatggatattgttgctaaaggacatatccaagaggcaagaaattttttcaat
agcttccgtgaagatcatgagatgatgcactcacgagaccttcaaaagttggaaggagtt
ctttctccctctcatctggaggaaatggaatttgctcatactcttaggcagagtaaagtc
aacattaagatatgtcagtactccaacgagctcctgatgcagtatcttcggaagtcaaaa
tggactataattctcgggattgtcaatgagcatattaacttccaagtttctcctggacag
cccatctcaatttctgatgatcctgatgctgtaacattaattggaagcagccaggatgca
gctaatcagataaataaaaaagaaatacattgggggttgcttgaagattctttagaagaa
cgattggagaagacagggggttttctctcagatactgaaaagacggaaggagaaaccaaa
gagggggacatggatgagaataagaaaagatcaatagatggtggaaagcaaggagcttca
atcaaaaagtcaaaaaaggataaagctgctagtgcaacaactaaaattgctcgtcctgaa
gctaatacagtatctgcagcaccacgagtcaaacccgagcttcctttgccagtaatgcca
actgaggtggaacagtctattcttgaggacttgagaaaccgtgtacagttgagtagtgtg
acactgccatctgtcagcttttatacctttatcaacacgcataatggtttaaactgttca
tcaatttcacatgatggatccttgattgctggtggattctcagactcctcactgaaggtt
tgggacatggcaaagcttggacatcaagctggcaattctattttgcagggtgaaaatgat
actgctccgagtgaacaaggccagagtccaaacagtggcaaaagatcttatacattgttt
cagggtcattcaggtccagttcattcagccacttttagccctcttggggattttattttg
tcttcttcagcagatacgacagttcgattatggagcacaaaactcaatgcaaatcttgtt
tgctacaagggccataattaccctgtctgggatgttcagttcagtcctgtgggacaatat
tttgccagtgcttcacatgatcgcacagcaaggatttggtctatggataggatacagcct
ttgaggataatggcaggtcatttgtctgatgttgattgcttgcaatggcatgccaactgc
aactacattgccactggctccagtgacaaaacagttcgactgtgggatgtacaaagcggg
gagtgtgtccgcatttttattggtcataggagtatgattttatcactggccatgtcacct
gatggtcgatatatggcatctgctgatgaagatggcacaatcatgatgtgggacctctca
agtggacgctgcatatcacctttgataggccacaattcatgtgtatggtcacttgccttc
agttgtgaaggatcacttctagcatctggttcagctgactgtactgtaaaattatgggat
gtaactacgagcacaaaggccccaaggacagaagaaagcaaaagtggaaatacaaacaga
ttgagattgttaaaaactttgccgacgaagtctactccagtttacactttgaggttttcc
cgtaggaatctgcttttcgctgctggagccctcgctaaaagtcagtga
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