KEGG   Populus trichocarpa (black cottonwood): 7465421
Entry
7465421           CDS       T01077                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    7465421
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pop03021]
    7465421
Enzymes [BR:pop01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     7465421
Transcription machinery [BR:pop03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     7465421
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 7465421
NCBI-ProteinID: XP_024446280
LinkDB
Position
18:complement(1294192..1302294)
AA seq 1192 aa
MGASSDYMEDVGPSSKGEVDDMDMDMDEDLMDTTNLNELGKETLQSFCKKAASLFFDEYG
LISHQINSYNAFINSGLQRVFDSFGEVAVEPGYDSSKQKDGEWRRASVRFGKVTLDRPSF
WGGTSSDAEHNMFPRHARLQNMTYSARMKIHVNVQVYTQTVGRSDKFKTGIDKVVQKNVV
HTENREIIIGRIPVMVKSDLCWLTTVEKGDCDFDHGGYFLIKGAEKVFIAQEQICMKRLW
ISNSQGWTVSYKSEVKRNRLIVRLVELSKLEYIKGEKKGLCVYFLSTEIPLWILFFALGV
RSDKEVIDLIDYASNDASIVNIFFASIHDADEKCEHFRREDRALDYVDKLLKKTRFPPKE
SIEDAISAYLFPRLNSRRHKARFLGYMVKCLLEAYTGHRKCDNRDSFRNKRFELASELLE
RELKVHVSHALRRMTKALQRDLYGDRDVHPIEHYLDASIVTNGLTRAFSTGAWCHPFKWM
ERVSGVVGNLGRANPLQTMIDLRKTRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENC
GLVKNLAVTGVVSTNISESLVDKLFDSGMEKLVDDTYTKLDGKHKVFLNGEWVGVCEDSC
LFVGELRSMRRRRELPYQVEIKRDEQQREVRIFSDAGRILRPLLVVENLDKIKAFKGGNY
IFTSLLDKGIIEFIGTEEEEDCCTAWGIKFLLADIEGKQPMKYTHCELDMSFLLGLSCGI
IPFANHDHARRVLYQAQKHSQQAIGFSTTNPNIRVDTLSHQLHYPQRPLFRTMISDCLGK
PGYPLGHNAVLPKPELFNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKA
EVDNKELTDKRRKSEDSITFGKIQSKIGRVDSLDDDGFPFIGANMQSGDIVIGKCAESGA
DHSVKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLES
QENFPFTIQGVVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSKRYATPFSTLSVDDI
IDQLHRAKFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLVHMAEDKVKFRNTGPVHPLT
RQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSEMHICQKCKNVANVIQR
GVPGGRKIRGPYCRVCESVDDLVKVSVPYGAKLLCQELFSMGISLKFDTRVS
NT seq 3579 nt   +upstreamnt  +downstreamnt
atgggtgcatcatcagattacatggaggatgtgggtccgagtagtaagggtgaagttgat
gatatggatatggatatggatgaggatttgatggacacaactaacttaaatgaattgggg
aaagaaactttgcaaagtttctgtaagaaggcagcgtctttgttttttgatgagtatggt
ctcatcagtcaccaaatcaactcatataatgctttcatcaacagtggactccagagggtc
tttgattcatttggtgaggttgctgttgagcctggatatgactcatctaagcagaaggat
ggtgaatggagacgtgcatcagttaggtttggaaaggtcacccttgatcgaccaagtttt
tggggtggtacttcaagtgatgctgagcataatatgtttcccagacatgccagacttcag
aatatgacatattcagcgagaatgaaaattcatgtcaatgttcaggtatacacacaaact
gttggtagaagtgacaagttcaaaacagggatagacaaagttgttcagaagaatgttgta
catactgaaaacagggaaatcattattggaaggatccctgttatggtgaagtctgacctt
tgctggctgacaacagttgaaaagggggattgcgattttgatcatggaggctattttttg
atcaaaggtgcagagaaggtgttcattgcacaagaacaaatttgtatgaagagactttgg
atttcaaatagtcagggctggaccgtttcatacaaatctgaagttaagaggaacaggttg
attgttagactagtggagctctctaaattagaatacattaaaggagaaaagaaaggcctc
tgtgtatacttcttgtcgacagagatccctttatggatattgttttttgcccttggtgta
aggtctgacaaagaagtgatagatttgattgattatgccagcaatgatgccagcattgtg
aatatattctttgcctcaattcatgatgctgatgagaaatgcgagcattttcgtagggag
gacagagcacttgattatgtggataaactgttaaaaaagaccagattcccaccaaaagaa
tctattgaagatgccattagtgcatatctgtttcccaggcttaatagccgcaggcacaag
gctcgttttcttggatacatggtgaagtgtcttttggaggcctatactggccacaggaaa
tgtgacaatagggatagttttagaaacaagaggtttgagttggctagcgagttgcttgaa
cgagagctaaaagtgcatgtttcacatgcactcaggcgcatgaccaaggctttgcagaga
gacctatatggagaccgtgatgtgcacccaattgaacactatttggatgcttcaatagtg
accaatggtttgacgagagcattctcaactggggcatggtgccatcctttcaagtggatg
gaaagggtttccggagttgtgggaaatcttgggcgtgcaaatccattgcaaacgatgata
gatctgcggaaaacaaggcagcaagttctgtacacaggaaaggttggagatgccagatac
ccccacccttctcattggggtagagtttgctttctctctactccagatggtgaaaactgt
ggccttgtaaaaaacttggctgtcactggagttgtcagtaccaatatatcagaatctcta
gttgataaattgtttgatagtgggatggagaaactggttgatgatacttacactaaactg
gatgggaagcataaggtgtttctaaatggtgaatgggttggagtctgcgaagattcttgt
ttgtttgttggtgagctaagaagcatgcgacgcaggagagaattgccctatcaggtggaa
atcaaaagggatgaacaacagagagaagtacgcatattttctgatgctggaaggatctta
cgccctcttttagttgttgagaacttggataaaataaaagcatttaaagggggaaattac
atcttcacttctcttctggacaaggggattattgagtttattggaacagaagaggaagag
gactgttgtactgcatggggcatcaaatttcttttagcagatattgaggggaagcaacct
atgaagtatacacactgtgaacttgacatgtcctttttattaggtttgagttgtggaatt
attccctttgccaatcatgaccatgcacgaagggtcctgtaccaagctcaaaaacattct
caacaggctattggattttccacaacaaatcccaacatcagagttgacaccttgtctcac
caattgcattacccccaaaggcctctatttcggacaatgatttctgattgtctcggtaaa
cctggatacccacttggtcataatgcagtgctgccaaagccagagttgtttaatggtcag
aatgctatagtggcagttaatgttcatctgggttacaaccaagaggattcgttggtaatg
aatcgtgcttctttagagcgtggcatgttccgctctgagcacattagaagctacaaggcg
gaggtggacaacaaggagctaactgacaagaggcggaagtccgaggattctattactttt
gggaaaatacaaagtaaaattggacgggttgacagccttgatgatgatggatttcctttt
attggtgctaatatgcaaagtggtgatattgtgatagggaagtgtgcagaatctggggca
gatcatagtgtaaaactgaagcacacggagaggggcatggttcagaaagtggtattgtca
tctaatgatgagggaaagaattttgctgtggtgtctttgagacaggttcgatctccttgt
cttggagacaagttctcaagcatgcatgggcaaaagggtgttctgggcttcttggagtct
caggagaacttccctttcacaattcaaggagttgttcctgatattgttataaacccacat
gcatttccgtcacgacaaactcctggtcaactattagaggctgctttaggaaagggaatt
gcctgtggtggctcaaagagatatgctacccctttctccactctctcggttgatgacatc
atagaccagcttcacagggctaaattttcaagatggggaaatgaaagagtctacaatggt
cgaactggtgaaatggttcgttctctcatatttatgggaccaacattctatcagcggctg
gtccacatggctgaagacaaagtaaaatttcgcaacacgggaccagtacacccacttaca
agacagccagttgcagaccgtaagcgttttggtggtatcaagttcggtgagatggagcgt
gactgcctcatagctcatggtgcgtctgcaaacctgcacgaacgcctttttactctcagt
gactcctctgaaatgcatatctgccagaaatgcaaaaatgtggccaacgtgatccaacgg
ggtgtgcctggtggccgcaagattaggggtccctattgccgggtttgtgagtctgttgat
gaccttgttaaggttagtgtaccttatggggccaagttgttgtgccaggagcttttcagc
atgggcataagtttgaaatttgataccagggtttcttga

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