Populus trichocarpa (black cottonwood): 7465490
Help
Entry
7465490 CDS
T01077
Name
(RefSeq) cleavage stimulation factor subunit 77 isoform X1
KO
K14408
cleavage stimulation factor subunit 3
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7465490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7465490
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
7465490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
TPR_19
HAT_Syf1_CNRKL1_C
TPR_15
TPR_16
TPR_2
TPR_CcmH_CycH
NRDE-2
Motif
Other DBs
NCBI-GeneID:
7465490
NCBI-ProteinID:
XP_002303484
UniProt:
B9H057
LinkDB
All DBs
Position
3:12914352..12926873
Genome browser
AA seq
769 aa
AA seq
DB search
MASVDNGAQSETKDQATTSTTAATDPYNVEAAEILASSAQHMPIAQAAPIYEQILSLFPT
ASKFWKQYAEAHMAVNNDDAIKQIFSRCLLNCLHIPLWRCYIRFIRKVNEKKGADGQDEI
RKAFDFMLGYVGADMASGPVWMEYITFLKSLPAQTAQEESIRMTAIRKTYQKAIITPTHH
VEQLWREYENFENSVSRQLAKGLVSEYQPKYNSARAVYREQKKYVDEIDYNMLAVPPTGS
FKEEQQWMAWKRFLTFEKGNPQRIDSVSSNKRIIFTYEQCLMYLYHYQDVWYDYATWHAK
SGSIDSAIKVFQRALKALPDSDTLKYAYAELEESRGAIQPARKIYESLLGDGVNATALAH
IQFIRFLRRNEGVEAARKYFLDARKSPDCSYHVYVAYALIAFCLDKDSKIAHNIFEAGLK
RFMHEPVYILEYADFLSRLNDERNIRALFERALSSLPPEESVEVWKRYIQFEQTYGDLAS
MLKVEQRRKEALSRTGEDGASALESSLQDVVSRYSFMDLWPCSSKDLDHLARQEWLAKNI
NKKAEKSAVSNGPATLDKIPAGLASNSNVSGKVIYPDTSQTVIYDPRQKLEAGIPPSTTA
SGFKAASNPLSNPIGLAPNVFDEVLKATPPALISFLANLPVVEGPAPNVDIVLSICLQSD
VPVGKTGKSGTTQTPMLSGPATSDLSGSSRSRPVPSGSSFKTRDRQSGKRKDRDRQEEDE
TATVQSQPLPRDVFRIRQIQKSRAAATTSQTGSVSYGSALSGDLSGSTT
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atggcatctgtcgataatggagctcaatctgaaacaaaggatcaagcaacaacaagtact
actgctgcgactgatccatacaatgtcgaagctgcagaaatattagctagcagcgcacag
catatgccgattgcccaagctgcaccgatatatgagcaaatcctttcactgtttcccact
gcctcaaaattttggaaacaatatgcggaggcacatatggctgtgaataatgatgatgct
ataaaacagatatttagccggtgtttattgaattgtcttcatattcctctttggcgatgc
tacattcgattcatcagaaaggtcaatgagaagaagggtgcagacgggcaggatgaaata
agaaaagcttttgacttcatgcttggttatgttggggcagacatggcatctgggcctgta
tggatggaatacattacctttctgaagtcactaccagctcaaactgcacaggaagagtca
atacggatgaccgctatacgtaaaacataccagaaagctattatcactcctacccatcat
gttgaacaactctggagagaatatgaaaattttgaaaattctgtcagccggcaattggcc
aaaggactcgtatctgaatatcaaccaaaatataacagtgccagggctgtctatagggag
cagaagaaatatgttgacgaaattgattataatatgctagctgtaccaccaactggatct
ttcaaggaagaacaacaatggatggcttggaagagatttttgacgtttgagaaaggaaac
ccccaaaggatagacagcgtgtcctccaacaaacgaattatattcacctatgagcagtgt
ctgatgtatttgtatcattatcaagatgtatggtatgactatgctacctggcatgcaaaa
agtggctctatagattctgcaatcaaagtgtttcagagggctttgaaggctcttccagat
tcagatacgctgaagtatgcttatgctgagttggaggaatctcgtggagcaatccagcct
gcaaggaaaatctacgaaagcctcttgggagatggtgttaatgcaacagcactagctcat
atacagtttattcgctttctaagaaggaatgaaggagtggaagcagctcgcaagtacttc
ttagatgctcggaaatccccagactgctcttatcatgtttatgttgcttatgctttgata
gcattttgtctggacaaggattcaaagatcgcgcacaatatttttgaagcaggattgaaa
cgcttcatgcatgaaccagtgtacattctggaatatgcagatttcttgtcccgtttgaat
gatgagagaaacattcgagctttatttgagcgtgcattaagctcgctaccacccgaggaa
tctgttgaggtctggaaacgatatatccagtttgagcaaacatatggtgatcttgccagc
atgttgaaggtcgagcaaagaagaaaagaagctctttcgaggacaggggaagatggagca
tcagcattagagagttcattgcaggatgttgtgtcacggtatagtttcatggatctttgg
ccatgctcctctaaggatttggatcacttagctcggcaagagtggctagctaaaaatatt
aataagaaagcagagaagtctgctgtttctaatggacctgcgactttagataagattcct
gctggtctggcaagtaattcaaatgtatctggtaaagtaatttatccagatacctcacaa
acggtaatttatgacccaaggcaaaagctagaggctggaattccacctagcacaacagcg
tctgggttcaaggctgcttctaacccattgtcgaatcctattggattggcacccaatgta
tttgatgaggtgctgaaagcaacaccacctgcattgatatcttttttagcaaacttgccc
gtagttgaaggtcctgcaccaaatgtagatattgtattatcaatttgtttgcagagtgac
gtacctgttgggaaaacaggaaagtcagggacaacccaaactccaatgctttctggtcct
gcaacaagtgatctttctggttcgagcagatcacgtcctgtcccaagcggttcatctttc
aaaacacgggatagacaatctgggaaacggaaggaccgagacaggcaagaagaagatgaa
acggcgaccgtccaaagccaaccattacctagagatgttttcaggatacggcagattcaa
aaatcgcgagctgctgctaccacttcacagacagggtcagtatcatacggaagtgctctt
tcaggagatctgtctggtagtaccacctga
DBGET
integrated database retrieval system
