KEGG   Populus trichocarpa (black cottonwood): 7465495
Entry
7465495           CDS       T01077                                 
Name
(RefSeq) splicing factor-like protein 1
  KO
K13095  splicing factor 1
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    7465495
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pop03041]
    7465495
Spliceosome [BR:pop03041]
 Complex A
  Other components
   Complex A specific factors
    7465495
SSDB
Motif
Pfam: SF1-HH KH-I_KHDC4-BBP RRM_1 KH_12 KH_1 eIF3g zf-CCHC PHD_4 zf-CCHC_2
Other DBs
NCBI-GeneID: 7465495
NCBI-ProteinID: XP_002303489
UniProt: B9H067
LinkDB
Position
3:12999780..13005212
AA seq 789 aa
MDQTPNPHFQTPQDQSNPPPPPPPPPPETLDFIPVCPNSPPPPPAEEPQFPDPQNPHKTL
ISNPPQIAPENGHNPQTTTPKPEIPKSLLSENGVANTNSGDRDCSGGEEETTSRRRRRSR
WDPPADAGADGSNNNDSGSGTRKRKSRWADDEPKPVIQLPDFMKDFTGGIEFDPEIQALN
ARLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQ
IIKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGGKIVI
RGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQEALDAAAGMVEKLLQPVDEVLNEH
KRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDC
PMKGTAGKKMDDEYQNFLAELGGTMPESATKQTATLALESSGSGNNPPWAGSNTGGLGSA
NQAGLGANGLKPKEYDDTNLYIGYLPPNLDDDGLIGLFSSFGEIVMAKVIKDRITGLSKG
YGFVKYCDVQMANNAIASMNGYRIDGRTIAVRVAGKPPQPTVPPGPPTSTMPAYPIPTQP
LGGAYPSQQFTAGGPLPNGPPTSYVGAHASYRGTPVPWGPPVPSPYGPYAPPPPPPPPGS
TMYPPIPGQPIPPYGVQYPLPVQPVPSGTLTQTVACSEAQQSYPPGVPSENSLSAPLAAS
NVYGHSIGYSSYYSAVPPPPPPPATDHSQGMGNVPWASNSTMPPPHSSSAEKARYGADAE
YAKFMAEMK
NT seq 2370 nt   +upstreamnt  +downstreamnt
atggatcaaaccccaaaccctcattttcaaaccccacaagaccaatccaatccaccacca
ccaccaccaccaccaccaccggaaaccctagatttcatccccgtttgccctaactcgccc
cctcctcctccagctgaagaacctcaatttcccgatccccaaaacccacacaaaacccta
atctccaatcctccccaaattgcccctgaaaatggccacaatccccaaactaccacacca
aaacccgagatccccaagtccttactctccgaaaatggcgtcgctaacacaaacagtggt
gacagagactgctctggtggagaggaggaaaccaccagccgacgccgccgtcgcagtcgt
tgggacccaccggcggatgctggtgccgatggtagtaacaataatgattcgggtagcggc
acgaggaagcgaaaatcgaggtgggctgacgacgagccaaagcccgtgattcagttacct
gattttatgaaagattttactggaggtattgaatttgatccggaaattcaagctttgaat
gctaggctattggagattagcaggatgttgcagtctggtttgcctcttgatgatagacct
gaaggagctagatctccttcacctgaaccaatttatgataatatgggaattaggattaac
actagagagtatagggcaagagaaagattgaacaaagaaagacaagagattatttcgcag
attattaagagaaacccggcctttaaaccgccagcagattataggccccccaagcttcaa
aagaagctttatatacctatgaaagagtatccaggctataattttattggtttgattatt
gggccaagagggaatacccagaagagaatggagagggagacaggtggtaaaattgttatt
agaggtaaggggtcagtgaaggaagggagattgcagcagaagagggatctgaaaccagat
ccatcagagaatgaggatttgcatgttttggtcgaggcggagacacaggaggcattggat
gctgctgcagggatggttgagaagttgttgcaacctgtggatgaagtcttgaatgagcat
aagaggcagcagcttagggaacttgctgctttgaatggaacaattagggatgaggagtat
tgtaggctatgtggtgagccaggccataggcagtatgcatgcccttcgcggacctctacg
tttaagagtgatgtgctttgtaagatttgtggcgatggtggacatccaaccattgattgt
cccatgaagggaacagctgggaagaaaatggatgatgagtatcagaactttttggctgag
ttaggtgggactatgcctgaatctgcaactaagcaaactgctaccttagctttggagtca
agtggttctggaaacaatcctccctgggctggtagtaataccgggggtcttggtagtgcg
aatcaagcagggctgggagcaaatgggctcaaacctaaagaatatgatgatacgaatttg
tatattggttacttgccacccaatcttgatgatgatggtttgattggtttgttttcttct
tttggtgaaatcgtgatggccaaggtgattaaggatcggattactggattgagtaaaggt
tatggttttgtgaagtattgtgatgttcaaatggctaataatgcaatcgcaagcatgaat
ggttatcgcattgatggtcgaaccattgctgtgagagttgctggtaagccacctcagcct
actgtcccgccaggtcctccaacatcaaccatgcccgcataccctatcccaactcaacca
cttggtggtgcctatccctcgcagcagtttacagcaggtggtccccttccaaatggtcca
cctaccagctatgtcggggcgcacgccagctatagaggaactccggttccatggggacca
ccagttccctctccttatggtccttatgctcctcctcctcctcctcctcctcctgggtca
accatgtaccctcccattcctggacagcctatacctccttatggtgtgcaatatcctcta
ccagtgcagccagttccctcgggcacactgactcagaccgtggcatgtagtgaggctcaa
caaagctacccaccaggagtgccatctgaaaacagcttatctgctccacttgcagcctca
aatgtgtatgggcactcgattggttattcatcttattacagtgcagttcctcctcctcct
ccccccccagcaacagaccattcacagggaatgggtaatgtgccttgggcctcaaactcg
accatgccacctccacattcttcttctgcagagaaagcaagatatggtgcagatgcagag
tatgcgaagtttatggcagagatgaaatga

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