Populus trichocarpa (black cottonwood): 7465495
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Entry
7465495 CDS
T01077
Name
(RefSeq) splicing factor-like protein 1
KO
K13095
splicing factor 1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7465495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7465495
Spliceosome [BR:
pop03041
]
Complex A
Other components
Complex A specific factors
7465495
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
RRM_1
KH_12
KH_1
eIF3g
zf-CCHC
PHD_4
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
7465495
NCBI-ProteinID:
XP_002303489
UniProt:
B9H067
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Position
3:12999780..13005212
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AA seq
789 aa
AA seq
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MDQTPNPHFQTPQDQSNPPPPPPPPPPETLDFIPVCPNSPPPPPAEEPQFPDPQNPHKTL
ISNPPQIAPENGHNPQTTTPKPEIPKSLLSENGVANTNSGDRDCSGGEEETTSRRRRRSR
WDPPADAGADGSNNNDSGSGTRKRKSRWADDEPKPVIQLPDFMKDFTGGIEFDPEIQALN
ARLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQ
IIKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGGKIVI
RGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQEALDAAAGMVEKLLQPVDEVLNEH
KRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDC
PMKGTAGKKMDDEYQNFLAELGGTMPESATKQTATLALESSGSGNNPPWAGSNTGGLGSA
NQAGLGANGLKPKEYDDTNLYIGYLPPNLDDDGLIGLFSSFGEIVMAKVIKDRITGLSKG
YGFVKYCDVQMANNAIASMNGYRIDGRTIAVRVAGKPPQPTVPPGPPTSTMPAYPIPTQP
LGGAYPSQQFTAGGPLPNGPPTSYVGAHASYRGTPVPWGPPVPSPYGPYAPPPPPPPPGS
TMYPPIPGQPIPPYGVQYPLPVQPVPSGTLTQTVACSEAQQSYPPGVPSENSLSAPLAAS
NVYGHSIGYSSYYSAVPPPPPPPATDHSQGMGNVPWASNSTMPPPHSSSAEKARYGADAE
YAKFMAEMK
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaccccaaaccctcattttcaaaccccacaagaccaatccaatccaccacca
ccaccaccaccaccaccaccggaaaccctagatttcatccccgtttgccctaactcgccc
cctcctcctccagctgaagaacctcaatttcccgatccccaaaacccacacaaaacccta
atctccaatcctccccaaattgcccctgaaaatggccacaatccccaaactaccacacca
aaacccgagatccccaagtccttactctccgaaaatggcgtcgctaacacaaacagtggt
gacagagactgctctggtggagaggaggaaaccaccagccgacgccgccgtcgcagtcgt
tgggacccaccggcggatgctggtgccgatggtagtaacaataatgattcgggtagcggc
acgaggaagcgaaaatcgaggtgggctgacgacgagccaaagcccgtgattcagttacct
gattttatgaaagattttactggaggtattgaatttgatccggaaattcaagctttgaat
gctaggctattggagattagcaggatgttgcagtctggtttgcctcttgatgatagacct
gaaggagctagatctccttcacctgaaccaatttatgataatatgggaattaggattaac
actagagagtatagggcaagagaaagattgaacaaagaaagacaagagattatttcgcag
attattaagagaaacccggcctttaaaccgccagcagattataggccccccaagcttcaa
aagaagctttatatacctatgaaagagtatccaggctataattttattggtttgattatt
gggccaagagggaatacccagaagagaatggagagggagacaggtggtaaaattgttatt
agaggtaaggggtcagtgaaggaagggagattgcagcagaagagggatctgaaaccagat
ccatcagagaatgaggatttgcatgttttggtcgaggcggagacacaggaggcattggat
gctgctgcagggatggttgagaagttgttgcaacctgtggatgaagtcttgaatgagcat
aagaggcagcagcttagggaacttgctgctttgaatggaacaattagggatgaggagtat
tgtaggctatgtggtgagccaggccataggcagtatgcatgcccttcgcggacctctacg
tttaagagtgatgtgctttgtaagatttgtggcgatggtggacatccaaccattgattgt
cccatgaagggaacagctgggaagaaaatggatgatgagtatcagaactttttggctgag
ttaggtgggactatgcctgaatctgcaactaagcaaactgctaccttagctttggagtca
agtggttctggaaacaatcctccctgggctggtagtaataccgggggtcttggtagtgcg
aatcaagcagggctgggagcaaatgggctcaaacctaaagaatatgatgatacgaatttg
tatattggttacttgccacccaatcttgatgatgatggtttgattggtttgttttcttct
tttggtgaaatcgtgatggccaaggtgattaaggatcggattactggattgagtaaaggt
tatggttttgtgaagtattgtgatgttcaaatggctaataatgcaatcgcaagcatgaat
ggttatcgcattgatggtcgaaccattgctgtgagagttgctggtaagccacctcagcct
actgtcccgccaggtcctccaacatcaaccatgcccgcataccctatcccaactcaacca
cttggtggtgcctatccctcgcagcagtttacagcaggtggtccccttccaaatggtcca
cctaccagctatgtcggggcgcacgccagctatagaggaactccggttccatggggacca
ccagttccctctccttatggtccttatgctcctcctcctcctcctcctcctcctgggtca
accatgtaccctcccattcctggacagcctatacctccttatggtgtgcaatatcctcta
ccagtgcagccagttccctcgggcacactgactcagaccgtggcatgtagtgaggctcaa
caaagctacccaccaggagtgccatctgaaaacagcttatctgctccacttgcagcctca
aatgtgtatgggcactcgattggttattcatcttattacagtgcagttcctcctcctcct
ccccccccagcaacagaccattcacagggaatgggtaatgtgccttgggcctcaaactcg
accatgccacctccacattcttcttctgcagagaaagcaagatatggtgcagatgcagag
tatgcgaagtttatggcagagatgaaatga
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