KEGG   Populus trichocarpa (black cottonwood): 7465542
Entry
7465542           CDS       T01077                                 
Name
(RefSeq) COMPASS-like H3K4 histone methylase component WDR5A
  KO
K14963  COMPASS component SWD3
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    7465542
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pop03036]
    7465542
Chromosome and associated proteins [BR:pop03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    ATAC complex
     7465542
    NSL complex
     7465542
   HMT complexes
    COMPASS/SET1 complex
     7465542
    COMPASS/SET1 complex (yeast)
     7465542
    MLL-HCF complex
     7465542
    MLL3/MLL4 complex
     7465542
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     7465542
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd WDR55 Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_SPT8 Beta-prop_WDR19_1st Beta-prop_Nup120_160 WD40_like Beta-prop_DCAF12 Beta-prop_NWD2_C eIF2A Beta-prop_NUP159_NUP214 Beta-prop_HPS5 Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_Vps41 RMC1_N Beta-prop_VPS8 DUF5888 PALB2_WD40 VPS8_N WD_LRWD1 Caudo_bapla_RBP ELYS-bb WDR54 Calmodulin_bind
Other DBs
NCBI-GeneID: 7465542
NCBI-ProteinID: XP_002310317
UniProt: B9HFS6
LinkDB
Position
7:complement(736333..738521)
AA seq 317 aa
MPDPIESYKPYTLTQTLQGHKSSISSVKFSSDGRFLGSSSADKTIKTYSLSPSSPPTSPI
TPLHDFHGHEQGVSDLAFSSDSRFIVSASDDKTLRLWDVTTGSTIKTLHGHTNYVFCVSF
NPNSSMIVSGSFDETVRIWDVKSGKCLKVLPAHSDPVTCVDFNRDGSLIVSSSYDGLCRI
WDSGTGHCIKTLIDDENPPVSFVKFSPNGNFILVGTLDNNLRLWNFSTGKFLKTYTGHAN
TKYCISPAFSITNGMYIVGGSEDNCMYLWELQSRKIVQKLEGHTDTVISVACHPTQNMIA
SGAIGSDKTVKIWTQEK
NT seq 954 nt   +upstreamnt  +downstreamnt
atgccagacccaattgagtcctacaaaccctacaccctaacccaaaccctacaaggccac
aaatcctccatctcctccgtcaaattctcctccgacggccgtttcctcggctcttcctcc
gctgacaaaaccatcaaaacctattccctctccccctctagtcctcccacttccccaatc
actcctctccatgacttccacggccacgaacaaggcgtctccgaccttgccttctcctct
gattcccgcttcattgtctctgcctccgacgacaaaaccctccgcctctgggacgtcaca
actgggtccaccatcaaaacccttcacgggcacaccaattatgtgttttgcgtcagcttt
aacccaaattccagtatgattgtttcgggttcttttgatgagactgttagaatttgggat
gtgaagagtggaaagtgtttgaaggtgttgcctgcccattctgatccagttacatgtgtt
gattttaatagagatggttcgcttattgtatccagcagttatgatggcttgtgtaggatc
tgggattctgggactggtcattgcatcaagactttgattgatgatgaaaatccacccgtt
tcctttgttaagttctcgcctaatggaaattttattcttgttggcactttggataacaat
ttgaggctttggaatttttcaactgggaaatttctgaagacatacactgggcatgccaat
acaaaatactgtatttcgcccgccttttccataacaaatggaatgtacattgttggcggt
tctgaggataattgtatgtacttgtgggagcttcaaagcaggaaaatagtacagaaattg
gaaggtcacactgatacagttatatcagtagcatgccatcccacccagaacatgatcgca
tccggtgcaataggcagtgacaagactgtgaagatctggactcaggaaaaatga

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