Populus trichocarpa (black cottonwood): 7465597
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Entry
7465597 CDS
T01077
Name
(RefSeq) cysteine protease ATG4 isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04136
Autophagy - other
pop04145
Phagocytosis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
7465597
04136 Autophagy - other
7465597
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pop01002
]
7465597
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7465597
03029 Mitochondrial biogenesis [BR:
pop03029
]
7465597
Peptidases and inhibitors [BR:
pop01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
7465597
Membrane trafficking [BR:
pop04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
7465597
Mitochondrial biogenesis [BR:
pop03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
7465597
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Peptidase_C54
Motif
Other DBs
NCBI-GeneID:
7465597
NCBI-ProteinID:
XP_002309707
UniProt:
B9HG97
LinkDB
All DBs
Position
7:complement(15523903..15529863)
Genome browser
AA seq
481 aa
AA seq
DB search
MKVFRDRGAVSPSKTTTTDTPKSSFISDSSEPGSTDTKVSKPSLWSSFFASAFSVFDIYR
DSSSTSHNEAPHIRHSNGWTSSVKKIVAGGTMRRIQERVLGTSKTGISNTTSDIWLLGAR
YKISQDDSSGNADATNALAAFHRDFSSRILITYRKGFDMIEDSKLTSDVNWGCMLRSSQM
LVAQALLFHRLGRSWRKPVDKPLDRDYVEILHLFGDSEASAFSIHNLLQAGKAYGLAAGS
WVGPYAMCRSWESLARSKREETNLEYQTLPMAVYVVSGCEDGERGGAPVLSIEDAARHCS
EFSKGREDWTPILLLVPLVLGLDKINPRYIPSLQATFTFPQSLGILGGKPGASTYIVGVQ
DENAFYLDPHEVQPVVNFSRDDVEANTSSYHCDVVRHIPLDLIDPSLAIGFYCRDKDDFD
DFCSLASKLADESNGAPLFTVANSYKSSKHDSSEVRDDDPLGVMTMNDAEGCLNEDDWQL
L
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtttttcgtgataggggggctgtttctccatctaaaactactacaactgacacc
ccaaagagttcttttatatctgattcttcagaaccggggtccaccgacactaaggtttcc
aagccttctttgtggtcaagcttcttcgcatctgctttctcggtctttgatatatatcgc
gactcgtcttcaactagtcacaacgaagcacctcatattagacatagtaatggttggacg
tcatctgtgaagaaaatagtggcaggtggcacaatgaggagaatccaagagcgtgtatta
gggacaagcaagacagggatatctaacacgactagtgacatatggcttctaggagcgcgc
tacaagatttcacaagatgactcttctgggaatgcagatgctaccaatgctttagctgca
tttcatcgtgatttttcatcacgaattctaatcacgtatagaaaaggttttgatatgatt
gaagattcaaaacttacaagtgatgtaaactggggttgtatgcttcggagtagtcagatg
cttgttgctcaggcattgctttttcatcgattagggagatcttggagaaaaccagtggac
aagccattggatcgagattatgttgagatcttacatctttttggtgattcggaggcatcg
gctttctctattcacaatcttcttcaagctggaaaggcttatggacttgcagctggatca
tgggtaggcccttatgccatgtgccgctcttgggaatctctagcccgctctaagagagag
gaaaccaatcttgaataccagacacttccaatggctgtttatgttgtttctggttgtgaa
gatggggagcgagggggagctccagttctcagtattgaagatgctgctagacattgttca
gagttttctaaaggtcgagaagattggacgccaattcttctgctggttcctttggttctt
gggcttgacaaaataaatccaaggtatattccatccctgcaggcaacattcacctttccc
caaagccttggaattttgggtgggaaacctggtgcttcaacttacattgttggtgtgcaa
gatgagaatgctttttatcttgatccacatgaagttcagccggtggtcaattttagcaga
gatgatgtagaggccaatacttcatcttaccactgcgatgttgtgcggcacattcctctg
gatttgattgatccatccttggcaattggattttattgtcgagacaaagatgattttgat
gatttctgttcactggcatccaagctggcagacgaatcaaatggtgccccgttgtttacg
gtggctaattcctataaatcatcaaagcatgatagtagtgaggtccgagatgatgatccc
cttggtgtaatgactatgaatgatgcagagggctgcttaaacgaggatgactggcaactc
ctttaa
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integrated database retrieval system
