Populus trichocarpa (black cottonwood): 7465978
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Entry
7465978 CDS
T01077
Name
(RefSeq) protein REDUCED CHLOROPLAST COVERAGE 2
KO
K03255
protein TIF31
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
pop03012
]
7465978
Translation factors [BR:
pop03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
7465978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_10
eIF3_p135
TPR_NPHP3
CLU_N
TPR_2
TPR_9
TPR_MalT
TPR_8
PAM2
Motif
Other DBs
NCBI-GeneID:
7465978
NCBI-ProteinID:
XP_002308421
LinkDB
All DBs
Position
6:complement(18669373..18681768)
Genome browser
AA seq
1867 aa
AA seq
DB search
MAPKTGKAKPHKAKGEKKKKEEKVLPTVIEVTVETPDDSQVSLKGISTDRILDVRKLLGV
HVETCHLTNFSLSHEVRGPRLKDSVDIILLKPCHLTITEEDYTEEQSIAHIHRLLDIVAC
TTSFGASSTSPTKTPGRTGGSKESGSTETGGDNKKIVNKSGKDACTDAMEKADAAVSMCP
PPRLGQFYEFFSFSHLTPPVQYIRRSSRPFLEDKTEDDFFQIDVRVCSGKPMTIVASREG
FYPAGKRALLCRSLVSLLQQISRVFDSAYKALMKAFTEHNKFGNLPYGFRANTWVVPPLV
ADNPSVFPPLPVEDENWGGNGGGQGRDGKHDYRPWAKEFAILATMPCKTAEERQIRDRKA
FLLHSLFVDVSVFKAVAAIKSIIENQCFLSDTVKSFLHEERVGDLIIIITRDVSDASTKL
DCKNDGCQVLGVSQEELARRNLLKGITADESATVHDTPTLGVVVVRHCGFTAVVKASSEV
NWEGDPIPQDISIEEHPEGGANALNVNSLRMLLHKSSTPQSSNTLQRLQGGDLEILHSAR
SLVRKILEDSLLKLQEESSRYTKSIRWELGACWVQHLQNQAAGKTEAKKNEETNPEPAVK
GLGKQGALLREIKKKTDVKTGKTEEGKDVYAGNNLDMSKKPDSTNQEEMEKKDEEMKVIW
KKLLPEAAYLRLRESETGLHLKTPDELIEMAYKYYADTALPKLVADFGSLELSPVDGRTL
TDFMHTRGLQMCSLGRVVELADKLPHVQSLCIHEMIVRAYKHILQAVVASVNDVADLAAC
IASCLNMLLGTPSTETEDSDIINDEKLKCKWVETFVGKRFGWQWKHESYQDLRKFAILRG
LSHKVGLELLPRDYDMDNAFPFKRSDIISMVPVYKHVACSSADGRTLLESSKTSLDKGKL
EDAVNYGTKALSKLVSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL
GLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMME
EGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEVYSLSVQHEQTTLQ
ILQAKLGPEDLRTQDAAAWLEYFESKALEQQEAARNGTPKPDASISSKGHLSVSDLLDYI
TPDADMKAREAQKKARAKVKGKPGQNGETVSDEYQKDEILSPTYPIVENSSDKENKSETQ
FAEPGNEKSDSGLPDQSLLKTDDKTQEEDSDEGWQEAVPKGRSPTSRKSSGSRRPSLAKL
NTNFMNLPQSSRFRGKPNNFASPKTSPNDPAASTGLTVPVPKKFAKSASFSTKVNNSGAS
TGGAEKSSTPKSAPATPASTEQVAKAAPTASPISVQSAGKIFSYKEVALAPPGTIVKAVA
EQLPKGNLPMEPSTQGSNEASATDVTSGEVTTLKAAEVDNFLKPEAVKHLPASEGMKSPV
DQKKETEEGGLVATEQLEGKKSAVEDRTDKEDNGAEIKIVAVKVNTSEAGNISFLGNENL
DTSKDSNTISSPTEVPETQVSDGFPAASPDMEPQSTSTENSGLMEKDASISNEGVEDENT
LDPSSDNTNAKALSTEGGKQDETETGKETAKKLSAAAPPFNPSIIIPVFGSVTIPGFKDH
GGLLPSPVNIPPMLTVNPVRRSPHQSATARVPYGPRLSGGFNRSGNRVPRNKPSFNNGEH
TGDGNHFSPPRIMNPHAAEFVPGQPWVPDGYSILQNGYMATTNGMPVSPNGFPISPTGIP
VSPNGYPALLNGIQATQNEFPASPVSSVERPMLVSVDVRVENKSEAEAENGVETSAIEVG
VEDQSGEKEHQEEDVNPEIKENPAELPETSDTVVAIETCDSLPIEEKPSKCWADYSDNEA
DIVEVAS
NT seq
5604 nt
NT seq
+upstream
nt +downstream
nt
atggctcccaagactggaaaggccaagcctcataaagctaaaggagagaaaaagaagaag
gaagaaaaagttttgcctactgtcatagaagtcaccgttgaaacgccggacgattctcaa
gtgtctctcaagggcatctccacggacaggatcttggatgtaagaaagcttttgggtgtg
catgtcgagacatgccacttgaccaatttctccttatctcacgaggtacggggacccaga
ctcaaagattcagtggacatcatcttgctcaaaccctgccacctcaccattacagaagag
gactacacagaagaacaatccatagctcacatccaccgactcctcgacatcgtcgcctgc
accacctcatttggcgcctcttccacttctccgacaaaaacaccgggtcgaaccggaggt
tcaaaggagtccggttcgactgagacgggcggagataacaagaaaatcgtgaacaagagt
ggcaaggatgcttgtacggacgcgatggagaaagcggatgcggcggtttccatgtgcccg
ccgccacggcttggccagttttatgaattcttctctttctcgcacctcacgccgccggtt
caatatatcaggagatcgagtcgtcctttccttgaagataaaacggaagatgatttcttc
cagatagacgttagggtttgcagtgggaagccaatgacaattgttgcttcgcgggaagga
ttctatccagctggaaaacgcgctcttctttgtcgctctttggttagtttgttgcagcag
attagcagagtttttgattctgcatacaaagctcttatgaaagctttcactgagcataat
aaatttggtaaccttccttatggttttcgagcgaacacgtgggttgttccaccgcttgtt
gctgataatccttctgtttttccgccacttcctgtggaggatgagaattggggaggtaat
ggaggaggacaaggaagagatgggaaacatgattacaggccatgggcgaaggagtttgcg
attttggcaacaatgccttgtaaaacagcagaagagaggcaaattcgggaccggaaagcc
tttctgcttcatagtttatttgtcgatgtttctgtttttaaagctgttgcagcaatcaaa
agtatcattgaaaatcagtgctttttaagtgatactgtgaagtcgtttttgcatgaggaa
agagttggagatttgattattatcattacgagagatgtgtcagatgctagcaccaagttg
gattgtaaaaatgatgggtgccaggttcttggagtgtcacaggaagaacttgctcggaga
aatttactaaagggaataactgctgatgaaagtgcaactgttcatgatactcccacttta
ggtgtagtggttgttcgacattgtggcttcacagctgttgttaaagcttcttctgaggtg
aactgggaaggggatcctattccccaggacatttccattgaggaacaccctgaaggaggc
gccaatgctttaaatgttaatagcttgaggatgctattgcataagtcatcgacgccccag
tcatctaatacactccagcgactacaaggtggagatctcgaaattttacactctgccagg
tctttggtgaggaaaatactagaggatagtttgttgaagctacaggaagaatccagtaga
tacacgaaatctatcagatgggagctaggagcatgttgggttcaacatttgcaaaatcag
gctgcggggaaaactgaggctaagaaaaatgaagaaactaatcctgagcctgctgtcaag
gggcttggaaagcaaggtgcattgttaagggagataaagaagaaaactgatgtcaaaacc
ggcaaaactgaagagggaaaggatgtttatgctggtaacaaccttgacatgagcaagaaa
cctgatagcactaatcaggaagaaatggagaaaaaagatgaggaaatgaaagtaatatgg
aaaaagctgcttcctgaagcagcatatctgcgacttagagaatcagaaaccggtcttcac
ctcaagacacctgatgagttgattgaaatggcatataaatactatgctgacactgctctt
ccaaaactggtggcagattttggctccctggaactttcaccagttgatggaagaacattg
acagattttatgcatacacggggtttgcagatgtgttctttggggcgtgtggttgaactt
gcagacaagctccctcacgtgcaatcactatgtatacatgaaatgattgtccgagcctac
aagcacattttacaagctgttgtggcatcagttaatgacgttgctgacttggctgcttgc
attgcatcatgtctaaatatgttgttaggaacgccttcaactgaaactgaggactcggat
atcataaatgatgagaaactaaagtgtaagtgggtggaaacattcgttggaaagaggttt
gggtggcagtggaagcatgagagctaccaggatctaagaaagtttgccattcttcgtgga
ctgtcccacaaggttggccttgagcttcttcccagggactatgatatggacaatgctttt
cctttcaagaggtctgatattataagcatggtccctgtatacaagcatgttgcatgttca
tctgcggatggacgtaccctgctagaatcatccaaaacttccttagataaaggtaaattg
gaggatgctgtaaactatggaactaaggcactgtcaaaactcgtgtcagtctgtggccct
taccatcgaatgactgcgggagcatacagtcttctggctgtagtactctaccatactggg
gattttaatcaggctaccatttatcaacaaaaagcattggatattaatgagagggagctt
ggacttgatcatcctgatacaatgaaaagttacggggatctagctgtcttctactatcgt
cttcaacatacggaattggccttgaagtatgtcaatcgtgcactgtatcttttgcatcta
acgtgcgggccatctcatccaaatactgctgcgacgtatatcaatgtagcaatgatggaa
gaaggattagggaacgtgcatgttgctctgaggtaccttcacgaggctctaaagtgtaac
cagagacttcttggagcggatcatatacagactgctgccagctaccatgccatagcaatt
gctctgtcattgatggaagtttactccttaagtgttcagcatgaacagactactctgcaa
atactgcaggccaaacttggacctgaggatctacgcactcaggatgcagctgcatggctt
gaatattttgagtcaaaggctctggagcagcaagaagctgcgcgcaacggtactccaaag
ccagatgcctcgatctccagtaaaggtcatttaagtgtatcagatcttttggattatata
acaccagatgcagatatgaaagcaagagaagcacaaaagaaagctcgtgcaaaggttaaa
ggcaaaccaggccaaaatggggagacagtctcagatgaataccaaaaggatgaaatattg
tcaccaacttatcctattgtagaaaattcaagtgacaaggaaaacaaatctgaaactcaa
tttgcagagcctgggaatgaaaaatctgattctggtcttccagatcagtcattgttgaag
actgatgataagacccaagaggaagactcagatgaaggatggcaagaagctgttcctaaa
ggtcgttcaccgacaagtcgcaaatcttctggttcaaggaggccaagcctagccaaattg
aataccaacttcatgaatttaccccagtcatcaagattccgaggaaagcctaacaatttt
gcatcccctaaaacatcaccgaatgatcctgctgcttccactggactgacagttcctgtt
cctaaaaagtttgccaagagtgccagcttcagtacaaaagtaaataactctggtgcctct
actggtggagcagagaaatcaagtacccctaaatcagccccagctacccctgcctcaact
gaacaagttgccaaagcagccccaacagcaagtccaatcagcgttcagtcagctggaaaa
atcttttcctataaagaagttgctttggctcctcctgggacaattgtgaaggcagtagca
gaacagttgccgaaaggaaatcttccaatggaaccaagtactcagggtagcaatgaggca
tctgcaactgatgtcacatcaggagaggtgacaacattaaaagctgcagaggtagacaac
tttctgaaacctgaagcagtgaaacatcttccggcttcagagggaatgaaaagtcctgtc
gatcaaaagaaagaaacagaagaagggggtttggtggcgacagagcaactcgaaggaaag
aagtctgctgttgaggatcgcactgataaagaagacaatggtgctgaaattaaaatagtt
gctgttaaagttaatacctcagaagctggaaacatttcattcttgggtaatgagaatttg
gatacttccaaggattcaaataccatctcttccccaactgaagtgccagaaacacaagta
tcagacggtttcccagcagcttcccctgatatggaacctcaatctacttcaactgaaaat
tctggtttgatggaaaaagatgcttcaatctcaaatgaaggggtagaagatgagaatact
ctggatccatctagtgacaatacaaatgctaaggcattgtcgactgaaggaggaaagcaa
gatgaaacagaaactggcaaggagacagccaagaaactttctgcagctgcaccaccattt
aacccatccataataattccagtttttggctcagttaccattccaggattcaaagatcat
ggaggacttcttccttcaccagtgaatattcctccaatgcttactgtcaatcctgttcgc
agatcacctcatcagtcagcaacagctagggttccatatggtccgaggctgtctggtggt
tttaacagatctggaaatcgcgttccacgtaacaagccgagcttcaacaatggtgagcat
acaggggatgggaatcatttcagccctcctagaataatgaacccacatgcagctgaattt
gtgcctggccaaccttgggttcccgatggctattcaatactgcaaaatggttatatggct
accacgaatggtatgccagtatctccaaatggcttccccatttccccaaccggtattcct
gtgtcaccaaatggttatccagcattattgaacggtattcaagcaactcaaaatgagttt
ccagcctctccagtcagttcagtagaaagacccatgttagtttctgttgatgttcgtgtt
gaaaacaagagtgaagctgaagcagagaatggtgttgaaacttctgcaattgaagtagga
gttgaagaccagtcaggtgagaaagaacatcaagaagaagatgtaaatcccgaaataaaa
gaaaatcctgccgagctcccagagaccagtgatactgttgtagcaatagaaacttgtgat
agcttgccaattgaggagaaaccaagcaagtgttgggcggattacagcgataatgaagct
gatattgttgaggttgcaagttga
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