Populus trichocarpa (black cottonwood): 7466073
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Entry
7466073 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7466073 isoform X2
KO
K06100
symplekin
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7466073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7466073
03019 Messenger RNA biogenesis [BR:
pop03019
]
7466073
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
7466073
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
7466073
U7-dependent histone pre-mRNA processing factors
7466073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
DUF7237
Motif
Other DBs
NCBI-GeneID:
7466073
NCBI-ProteinID:
XP_024443344
LinkDB
All DBs
Position
16:12091093..12103427
Genome browser
AA seq
1357 aa
AA seq
DB search
MVAMTKSSSRERLASLINSAKSASDIPSKLQTLRQLNQILQQQENANSLSEFLPRIFEFQ
SDQHSPVRKFATEMIGEIGLKHLEFVPEIVPVLMLVLEDLVPAVARQAITCGISLFRATL
EKLAIQGLYTSELDDLLKSSWSSMLEFKEKIYSIAFQLGSGGVRLLALKFVEEVILLYTP
DPYGTSEPPSHEGSSVEFNISWLRGGHPVLNVGDLSIEASRKLSLLLDQLRMPTVKSISN
LMIIVLVNSLATIAKKRPPCYGRILPVLLGLDPSNSVIEGMHGYGAHHALKNAFLTCLKC
NHLGAAPWRDRLVGVLKEMKAGELAEEALQVLRSNGSVEEAKEDFLVAQEEKLLIKSSDG
IPNNSARKRSGPEDSIDLADLAKDDDVSGKRVKSSPSVSEESSKELDHRANKKDDDNGPV
QQLVAMFGALVAQGEKAVGSLEILISSISADLLAEVVMANMRYLPTGHPQAEGDDESLLN
MTIVGSDTRAKYPSSFLTNVLSLSSSFPPIAAQLNAGHSVSKDIPTTDEEELQTTTDEEE
LQTTKDEEELHVAAADVADVYTGKAHSAEDELMPAGLPASSNVDLSGMQMDGLAISSNIH
DFENLDSEIPGLDSSARNDVFSETMGASSLVSTDIEDASQEQGTSLGTRSNQEVLPSISN
DRSEELSPKAAATDSNSLISSTATSVRLHQPLVLPKMSAPVVNLVDEQKDQLHNLAFIRI
IEAYKQIAVAGSSQFRLSLLASLGVEFPSELDPWELLKKHILSDYVVHEGHELTLHVLYR
LFGEVEEEHDFLSSTTAASVYEMFLLTVAEMLRDSFPPSDKSLSRLLGEAPYLPNSIFSL
LESLCSPGNIDKAEELQSGDRVTQGLSTVWSLILLRPPIRESCLKIALQSAVHHLEEVRM
KALRLVANKLYPLSSIAQQIEDFAKEKLLSVVNSDATESMDAEGSFTESQKDSILEKPSN
EHQSMSAISKDISSETHQSCTSESVSSLSISEAQRCLSLYFALCTKKHSLFRQIFIVYKS
ASKAVKQAVNRHIPILVRTMGSSSDLLEIISDPPIGSENLLMQVLQTLTEGAVPSPELLF
TIRKLYDSKIKDAEILIPILPFLPRDEILLIFPHLVNLPLDKFQIALARTLQGSSHSGTM
LSPAEVLIAIHGIDPDRDGIPLKKVTDACNACFEQRQIFTQQVLAKVLNQLVEQIPLPLL
FMRTVLQAIGAFPALVEFIMEILSRLVSKQIWKYPKLWVGFLKCALLTKPQSFNVLLQLP
PPQLENALNRTAALKAPLVAYASQPNIKSSLPRSVLVVLGIAPDPQTSSQAQTSLAQTGD
TNNSDKDVTVENSKTGETSNSVKEVLTEKSKESSVAS
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggtagcaatgacgaaatcgagttcaagagaaagactagcgagtctcatcaactcagcc
aagtctgcctctgacataccttcaaagctccaaactttgcgtcaattaaaccaaattttg
caacaacaagaaaacgctaactcactctctgagttccttcctcgaattttcgagtttcag
tctgatcagcactctcctgttcgcaaatttgccactgagatgattggagagattggattg
aagcatttagaatttgtgcccgaaattgttccggttttaatgttagttttggaagatctt
gtaccggctgttgctagacaagctattacttgtgggatcagtttgtttcgggctactctc
gaaaaacttgcaattcagggtctttatactagcgagctggatgatttgcttaagtcttcg
tggtcatcgatgttagagttcaaggaaaaaatttactccatagcttttcagctgggaagt
ggtggtgtaagattgctggcactgaagtttgttgaagaagtcattcttctttacactcct
gatccttatggcacttcagagcccccttctcatgaaggatcaagtgtggaatttaacata
tcatggctccgtgggggccaccctgtactaaatgttggagatttgtcaattgaggccagc
agaaaattgagtttattgctcgatcagcttaggatgccaacagtgaaatctatcagtaac
ttaatgatcattgtgcttgttaatagccttgccacgattgcaaagaaaaggcctccatgc
tatggacgcattctgccagttttacttggtttggatccctcaaactctgttattgaaggg
atgcatggttatggggcacatcatgctttaaaaaatgccttcctcacctgcttgaagtgc
aatcacctgggtgctgcaccgtggcgggatcgtttagttggtgttctaaaagagatgaaa
gcaggagagttggcagaggaagcgctacaagttttaaggagcaatggaagtgtagaggag
gcaaaggaagattttctagttgcacaggaagaaaaactcttaattaagtcatctgatggc
attccaaataattcagcaaggaaacgatctggaccagaagacagtattgatttggctgat
ttggctaaagatgatgatgtgtctggaaaacgtgtcaaatcatcccccagtgtctcggag
gaatcatctaaagagttggatcatagagctaacaaaaaagatgatgataatggacctgtg
cagcaacttgttgctatgtttggagccttggttgctcaaggtgaaaaagctgttggttct
ttggagattcttatttcaagcatctctgctgacttgttagctgaagtagtgatggctaac
atgcgctaccttcctaccggtcatccccaagcggaaggagatgatgagtcactattgaac
atgactattgttggcagtgacactagagccaagtatccatcatcttttctgactaatgtt
ctttcactttctagttccttcccacctatagctgcacaactgaatgctggtcattcagta
tccaaagacataccgacaacagacgaggaagaactgcagacgacaacagacgaggaagaa
ctgcagacaacaaaagacgaggaagaactccatgttgcagcagctgatgtcgctgatgta
tatactggaaaagctcatagtgctgaagatgaactgatgcctgcaggtttacctgcttct
tcaaatgtcgatttatctgggatgcagatggatggtttggctatttcatctaatatccat
gattttgagaatttagacagtgaaatacctggtctagattcttctgctcgtaatgatgta
ttttcagagaccatgggtgcttcttcactggtctctactgatattgaagatgccagccaa
gagcaaggtacaagtctgggtacaaggtcaaaccaggaagtgcttccatcaatatcaaat
gacaggtcagaggagctaagtccaaaagcagctgctacggattccaacagcctgatctcc
tcaactgcaacttctgtgcgtttacaccagcctcttgttctgcctaagatgtctgcacct
gttgtcaatcttgttgacgaacagaaggatcagctgcataatttggctttcatacgcatc
attgaggcatacaagcaaatagcagttgctggaagttcacaatttcgcctttccttgctt
gcttctttaggagttgagtttccttcagagttagacccatgggaactccttaaaaagcac
atattgtcagattatgtggttcatgagggacacgagttgacattgcatgtcctctacagg
ttatttggtgaggtagaagaggaacatgacttcctttcttctacaaccgctgcttctgtg
tatgaaatgttccttctgactgtggctgaaatgcttagagattcttttcctccttcagac
aaatctttaagtagattgcttggtgaagctccttatcttccaaattcaattttcagtcta
ttagagtccttgtgttctcctggaaacatcgataaagctgaggagttgcaaagtggagat
cgagttactcaaggtctcagcactgtatggagcctgattttgctgaggcctcctattcga
gaatcctgcttaaaaattgctctgcagagtgcagttcatcatttggaagaagtgcgtatg
aaggcacttcgtctggtggcaaataagctttatcctctctcatccatcgctcaacagata
gaagatttcgcaaaggaaaagctgctttctgtggtaaatagtgatgctacagaaagcatg
gatgctgaagggtcattcactgaatcacagaaggattcgattttggaaaaaccatcaaat
gagcatcaatctatgagtgccatcagtaaagatatctcctctgagactcatcagtcatgc
acatctgaaagtgtatcgtcactctcaatctcagaggcccagcggtgcttgtcactgtat
tttgccctgtgcacaaagaagcactccctttttcgccaaatttttattgtttataaaagt
gcatcaaaggcagttaaacaggcagttaatcggcacattcctatactagtccgtactatg
ggttcgtcatctgatcttcttgaaataatttcagatcctcctattggaagcgagaatctt
ctgatgcaggttttacaaacactgacagaaggggcagttccttcacctgaattgttattc
accattaggaagttgtatgattcaaaaataaaggatgcagagatcctaattccaatatta
ccattcctacccagagatgagattttgctgatctttccccatttagtgaatcttcctctg
gataagttccaaattgcacttgctcgtacactacagggatcatctcattctggtacgatg
ctctctccagctgaagtattaattgccatccatggtattgatcctgacagggacggaatc
cccttgaagaaggttacagatgcttgcaatgcttgttttgagcaacgacagatattcact
cagcaagttcttgcgaaggtcttaaatcagttggttgagcaaattcctcttcctttatta
ttcatgcgcacggtactacaggctataggtgcttttccagcattggtggagtttattatg
gagatcctttctcgtctcgtaagcaagcagatatggaagtacccgaagttgtgggttggc
ttcctgaagtgtgcactattgacgaagcctcagtcattcaatgtgttacttcagcttcct
ccaccacaactggaaaatgcactgaacagaaccgcagcactgaaagctcctttggttgcc
tatgctagccaaccaaacattaaatcttcacttccaaggtctgttctggtggtcctggga
atagctccagaccctcagacttcaagtcaagcacagacaagtctggcacaaactggagat
acgaacaactcagataaggatgtgactgtagagaattcaaaaactggagaaacgagcaac
tcagttaaggaggtgctgacagagaaatctaaagaatcttctgttgctagctga
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