Populus trichocarpa (black cottonwood): 7466079
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Entry
7466079 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7466079 isoform X1
KO
K08518
syntaxin-binding protein 5
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7466079
Membrane trafficking [BR:
pop04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
7466079
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
7466079
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
ANAPC4_WD40
Beta-prop_RIG_2nd
Synaptobrevin
Beta-prop_IFT140_1st
WDR55
Motif
Other DBs
NCBI-GeneID:
7466079
NCBI-ProteinID:
XP_002323587
LinkDB
All DBs
Position
16:complement(12329385..12337945)
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AA seq
1115 aa
AA seq
DB search
MLSAKRLIQKAVLLHHHQNNEERSSLTAADFDLQVVIHYGIPSTASLLAFDPIQRLLAIA
TLDGRIKVIGGDGIEALFTSPKQLPYKNIEFLQNQGFLISISIENDIQVWNLESRCLACS
LQWELNITAFSVISRSCFMYIGDEHGSMSVLKYDSEDAKLLWLPYRITADSLKEAAGFPS
PDHQPIVGVLPQPHSSGNRVLIAYQNGLIVLWDVSEGQILFVGGGKDLQLKDDSKNEVDP
NIPKDTSHHHLEEKEITALSWASSKGSILAVGYLDGDILFWKTSTTSSTRGQKNESTNSN
IVKLQLSSAEKRLPIIVLHWSTSDRPSNDGDGRLFIYGGDEIGSEEVLTVLTLEWSSRME
TVTCVGRMDITLAGSFADMILLPSSGPTEGNPKAAVSVLANPGQLHLFDDASLSALPSRQ
KHKASVLTMGFPMVVPTVDPPITVAKFITLPSGGNSSKMFSEIASATKRGSTPFQGGSAN
WPLTGGVPSHLSFTEHTGVERVYIAGYLDGSVRLWDATYPALSLICIVEGEVENIEVAGF
SDPVTNLDFCSLTLSLAVGNKCGLVRIYNLDGSSDETTFHFLIDTKHEVHTMPQGKGPPL
RAVFSLLNSPILALQFANYGAKLAVGLECGRVVVLDMSSLAVLFSTESVSSSCSPVISVN
WVECINTCSLVKSPKHSDSNMPINPTEQVMFFLTKDATLYMIDGGTGSMISSHPWHPKKK
SVAISMYVIDGSPSVPGLTDGKQLESDQNFIAKNESEHTTTSTGISSHNNEHHSSVNTLT
REKLLDSFILLCCEDSLHLYSTKNVIQGNNKTICKVKHAKPCCWASTFRKQGNICGVVLL
FQSGVIEIRSFSGLELVKETSLMSVLRWNFKANMEKMMSCDNGQITLAHGCELAFISLFS
GENCFRIPESLPCLHDKVLAAAADAAFNFSSNQKKKQGTKPGILGGIVKGFKGGKVDHSV
EITLNPKSDFSHLEGAFSKQPFSDSYRTAVDTEEVVELNIDDIEIDEPSLPTATTSSQDV
KHMKREKWSEREQLLGATDDMKPKLRTPEEIMAKYRKAGDAASVAAHARKKLVERQEKLE
RISRRTEELQSGAEDFSSMANELVKLMEKRKWWQI
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgctttctgccaagcgactcattcaaaaagccgtcctcctccaccaccaccagaataac
gaggaacgcagcagcttgacggcagcggactttgatttgcaagttgttatacactacggg
attccgtccacggcttcccttcttgcttttgatcccattcagcgccttttggctattgcc
acactggatgggagaattaaagtgattggtggtgatggtattgaagcactttttacgtca
ccgaagcaactgccttacaagaacatagagttcttacagaatcaaggattcttgatcagc
atttctattgagaacgatattcaggtctggaatctggagagcagatgcttagcatgttcg
ttacaatgggaattgaatataactgcgttttctgtaatcagtcgctcttgtttcatgtat
attggagatgaacacggttccatgtccgtgctgaagtatgattctgaagatgctaaactt
ttgtggttgccttatcgtataactgcagactctttaaaggaagcagctggatttccatct
cccgatcaccaacctattgttggagttcttcctcagcctcattcttcgggaaatagggtt
ctgattgcatatcaaaatggattgatagttctctgggatgtttctgaaggtcagatcctt
tttgttggaggtggcaaggatctccaactgaaggatgattctaaaaatgaagtagaccct
aatattcccaaagatacatctcatcatcatttagaggagaaagagatcacagctctaagt
tgggcatcttcaaaagggtccatccttgcagtgggatatttagacggggatatcttgttt
tggaaaacatcaactacttcgtccactagaggtcaaaaaaatgaatcgacaaacagcaat
attgttaagttacaattatcatcagctgaaaagaggctccctattattgttttacactgg
tccacaagtgatagacctagcaatgatggtgatggccgattgtttatctatggtggtgat
gaaataggatctgaagaagttctaacagtgttaactttagagtggtcatctaggatggaa
acagtgacatgtgttggtcgcatggatataacacttgccggctcttttgcggacatgatt
ttgttaccaagttctggaccaacagagggtaatcccaaagctgctgtttctgtattggca
aaccctggacaacttcatctttttgatgatgctagcttgtctgccttaccatctcggcaa
aagcataaagcaagtgtcttgactatgggatttcccatggtagtacctacagtagatcca
cccataactgtggcaaagttcattacgttaccctcaggaggaaactcatcaaagatgttt
tccgagatagcctcagctacaaaacgcggatccacaccattccagggtggttctgcaaat
tggcccttgactgggggtgtgcccagtcatctgtcattcacagaacatactggtgttgag
agagtgtacatagcaggttatctagatggatctgtacggttatgggatgccacatatcct
gccttatcacttatttgcattgtagaaggcgaggttgaaaacatagaagtggctggattt
agtgatccagtgacgaatttagacttctgttccctaacactaagtctggctgttggcaac
aaatgtggactggttcgcatttataacctggatggcagctcagatgagactaccttccac
tttctcatagatactaaacatgaagttcacacgatgcctcaagggaaaggtcctccactt
agagctgttttttctcttctcaattctcctattcttgcactacagtttgctaattatgga
gccaagcttgctgtggggcttgaatgtggtcgtgtggttgtacttgatatgagttcatta
gcagttttgttctctacagaatctgtatccagctcttgctcgccagtcatttcagtgaat
tgggttgaatgtataaatacttgtagccttgtgaaaagcccaaagcattcagattctaat
atgccaatcaaccctacagagcaagtcatgtttttccttaccaaggatgcaactctttat
atgattgatggtggaaccggtagcatgatcagctcccatccatggcatccaaaaaagaaa
tcagttgcaatttctatgtatgttatagatggcagtccttctgtacctggcttaacagat
ggaaagcagctggagtctgaccaaaatttcatagccaagaatgaatctgaacatacaaca
acttcaacagggattagttcacataataatgagcatcactcttcagttaacacactaacc
agagaaaaattgctggattcatttattttgctttgttgtgaggattcattgcacttatac
tctacaaagaatgttattcagggaaacaacaaaaccatttgtaaagtgaaacatgcaaaa
ccttgctgttgggcttcaacttttaggaaacagggaaacatttgtggagtggttttgctg
ttccagagcggagtaatagaaatcagatcattttcgggtttagagttggtgaaagaaacc
tccttaatgtcagttctaaggtggaatttcaaggcaaacatggagaagatgatgagttgt
gataatgggcagattacactggctcatgggtgtgaattggccttcatctcactattttcc
ggtgaaaattgtttcaggattccagagtctcttccatgtcttcatgataaggtacttgcc
gccgccgccgatgctgcctttaatttctcctcgaatcagaagaagaagcagggtactaaa
cctgggattctcggtggcattgtcaaaggctttaaagggggaaaggtagaccacagtgtg
gaaattactctgaatcccaaatccgattttagtcatcttgaaggtgctttttcgaagcag
ccattctcagattcatatcgaactgcagtagatactgaggaagttgtggagcttaacata
gatgatatagagatagatgaaccttctctacccacagcaactacttcatcacaagatgtg
aagcatatgaagagagagaagtggtcggaaagggagcaattattaggtgcgactgatgat
atgaagcccaaacttaggacacctgaagaaattatggctaaatacagaaaagcaggggat
gccgcttcggttgctgcacatgcaagaaaaaagcttgtagaaaggcaggaaaaacttgaa
agaatcagtaggcgcactgaagagctccaaagtggagccgaagacttttcatcaatggca
aatgagcttgtcaagttaatggaaaaacgaaaatggtggcaaatatga
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