Populus trichocarpa (black cottonwood): 7466176
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Entry
7466176 CDS
T01077
Name
(RefSeq) sister-chromatid cohesion protein 3
KO
K06671
cohesin complex subunit SA-1/2
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
7466176
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
7466176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_SCC3-SA
SCD
STAG
PDS5
HEAT
HEAT_2
Cnd1
Motif
Other DBs
NCBI-GeneID:
7466176
NCBI-ProteinID:
XP_002301652
UniProt:
B9GUB7
LinkDB
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Position
2:22234996..22243913
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AA seq
1117 aa
AA seq
DB search
MEDHPETSRNRSKRNRSKNATEERTSEEVEEREDDFEEVRPKSKRNRAAKDDTPAAVLLN
PDQSLIDVIKGNGVQIPQAVKLWVERYEKDPKLAMVELLTMLFEACGAKYSIKKELLDET
DVDDVVVALVNLARNGEVEDYQSSKRKDFKHFKDNLITFWDNLVTECQNGPLFDKVLFDK
CMDYIIALSCTPPRVYRQVASLMGLQLVASFITVAKALGLQRETTQRQLNVEKKKQIEGP
RLESLNKRLSATHDKILVLEDLMRKIFTGLFVHRYRDIDPNIRTSCIESLGVWVLSYPSL
FLQDLYLKYLGWTLNDKNAGVRKASVQALKKLYDVDDNVPTLGLFTERFSNRMIELADDI
DVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPAEIRRAIGELVYDHLIAQKFNNS
QSSSKGSDDGSSEVHLSRMLQILREFSADPILSIYVIDDVWEYMKAMKDWKCIISMLLDA
NPLIELTDDDATNLVRLLSASVRKAVGERIVPASDTRKQYYNKAQKEIFENNRRDITIAM
MKNYPLLLRKFMADKSKVPSLVEIIVHMNLGLYSLKRQESNFKNVLQLMKQSFFIHGDKE
ALRSCVKAIKFCSTESQGELKDYALNKLKNLEDELINKLKSAVKEAADGDEYSLLVNLKR
LYELQLAWSVPIESLYEDIVKVLHTFRNVDDEVVSFLLLNMYLHVAWSLQSIVNSETVSE
ASLTSLLFKRNALFEELEYFLGTPSEDREGNKCGNQLACRVCIILAEAWCLFRKTNFSST
KLEHLGYCPDTSVLQRFWKLCEQQLNISDETEDEETNKEYIEETNRDAVMIASAKLVVSS
AVPREYLTPEIISHFVMHGTSVAEIVKHLITIIKKNDDFPDIFLEALKRAYDRHLVDLSK
SDDESFTSKSLIECKDLAARLSGTFVGAARNKHRSDILKIARDGIEYAFLDSPKQLSFLE
GAVLHFVSKLPVVDILEILKDVQSRTENINTDEDPSGWRPYHTFVDSLREKYVKNEGLPD
EKERKRGGRPRKRRNIEGKRLFDEDSSSEEEDSISGSDREDAHDEEEKQDEEEEDEAPLI
HSLRSSSKLRSLKLSRDENKGHRRTGVSASKTSGASN
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atggaggaccaccccgaaacttcccgaaaccgctctaagaggaatcggtctaagaacgcg
accgaggagagaacaagtgaggaggtggaggagcgcgaggatgatttcgaagaggttcgc
cctaaatccaagcgtaatcgtgctgctaaggatgacactcccgccgccgtcctcctcaat
cccgaccaaagcttgatagatgttattaaagggaatggggtacaaattcctcaggcggtg
aagctttgggttgagcgatatgagaaggatccaaaacttgcaatggttgagctcttgacg
atgctgtttgaggcatgtggagccaagtatagtatcaagaaagagttgctggatgagact
gatgttgatgatgttgtcgttgctcttgtcaatcttgcaagaaatggtgaagttgaagat
tatcagagttcaaagaggaaggacttcaaacactttaaagataacctcatcacattctgg
gacaatttggttactgagtgccaaaatgggcccctgtttgataaggttttgtttgacaaa
tgcatggactatataatagcactgtcatgcactccaccaagagtttaccgtcaagttgca
tccttgatgggtctccaacttgtcgcgtcattcataacagtagctaaagcgcttggctta
caacgagaaactactcagagacaattaaatgtggaaaagaagaaacaaatagaaggacct
cgtctagagtccctaaataaaaggttatcagcaactcatgataagatacttgtactagag
gacttgatgcgcaaaatatttaccgggttattcgtgcatcggtaccgtgatattgatcct
aatattcgaacatcatgcattgagtctcttggtgtatgggttttgtcctatccatcactt
ttcttgcaggatttatacttaaagtatcttggatggacactaaatgataaaaatgcaggt
gtcagaaaagcatctgttcaagcattaaaaaaactttatgatgtggatgataatgtgccc
actctcggtctttttactgaaagattttccaaccggatgattgagcttgctgatgacatt
gatgtttctgtagctgtttgtgccataggacttgtaaaacaattacttaggcatcagctc
ctacctgatgatgacttgggtccgttatatgatttacttattgatgatccagcagaaatc
aggcgtgccataggagaattggtgtatgatcacctaattgcacaaaaatttaacaactct
caatctagctcaaaaggcagtgatgatggctcttctgaggttcatcttagcagaatgttg
cagattttgagggagttttcagctgatccaattctcagtatctatgttattgatgatgtt
tgggagtacatgaaagcaatgaaggactggaagtgtattatttccatgctcctggatgcg
aatccattaattgagcttaccgatgatgatgctacaaatttggttagacttctttctgca
tctgtcagaaaggctgtgggagagaggattgttccagcatcagatactcgaaagcaatat
tacaataaagctcagaaagaaatatttgaaaataatagacgggacataactatcgccatg
atgaagaactacccgctacttctgcgcaaattcatggccgacaaatcaaaagtgccatca
ttggttgagatcattgtgcatatgaacctagggctttattctctgaagagacaggagagt
aatttcaaaaatgtccttcagctcatgaaacagtcattttttatacatggtgacaaggaa
gcactcagatcttgtgtgaaggctatcaagttctgttccaccgaaagtcaaggagagctg
aaagattatgctctaaataaattgaagaatcttgaagatgaactcattaataagcttaag
tctgcagtgaaagaagcagcggatggtgatgaatattctctgcttgtgaatttgaaaagg
ttatatgagcttcagttggcatggtctgtacctattgagagcttatatgaagatattgtt
aaggttctccacactttcagaaatgtggatgatgaggttgtcagttttcttctgctcaat
atgtatttgcatgtagcctggagtctgcagtctattgtaaacagtgaaactgtctctgaa
gcttcgttaacttctctactgtttaaacgcaatgccttgtttgaggaacttgagtacttt
cttggaaccccttctgaagatagggaagggaataaatgtggaaatcagcttgcttgtaga
gtttgtattatacttgcagaagcatggtgtttgttcagaaagactaatttttcttcaaca
aagctggaacatttaggatattgtccagatacatctgttctacaaaggttctggaaactt
tgtgaacaacagttaaatatttcagatgagacagaagatgaagagacaaacaaggagtac
attgaggagacaaacagagacgcagttatgattgcttcagcgaagttggtagttagcagt
gcagttcccagggaatatcttactccggagatcatttctcactttgtgatgcatggaaca
agtgttgcagagatagtcaagcatctaatcaccatcataaagaagaatgatgattttcca
gacattttcctagaagcattgaaaagggcctatgatcggcatctggtggatctttcaaaa
agtgatgatgaatctttcaccagcaaatctcttatagagtgcaaggatcttgctgctcga
ctttctgggacattcgtgggtgctgctcggaacaagcatagatctgatattctaaaaatc
gccagggatggtattgaatatgctttcttagattctccaaaacagctctcttttctggaa
ggtgctgtgcttcattttgtgtccaagcttcctgtggttgacatcctggaaattctaaag
gatgtccagagcaggacagagaatataaatactgatgaagatcctagtggctggcgccct
taccacacatttgttgacagcttacgagagaagtatgtgaagaatgaaggtttgccagat
gagaaagagaggaaacgcggtggtcgcccaagaaagcggcgtaatattgagggaaagaga
ttgtttgatgaggacagttcaagcgaagaagaggattctattagtggttcagatcgagaa
gatgctcatgatgaagaagagaagcaggatgaggaggaagaggatgaggctcctttgata
cattccctcaggtcatcatccaagttgaggtcattgaaactttcaagagatgaaaacaaa
ggccatagaaggacaggagtttctgcttctaaaacatcaggggcatcaaactag
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