Populus trichocarpa (black cottonwood): 7466190
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Entry
7466190 CDS
T01077
Name
(RefSeq) fanconi-associated nuclease 1 homolog isoform X1
KO
K15363
fanconi-associated nuclease 1 [EC:3.1.21.-
3.1.4.1
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
7466190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pop03400
]
7466190
Enzymes [BR:
pop01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.1 phosphodiesterase I
7466190
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
Other FA pathway factors
7466190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VRR_NUC
FAN1_TPR
FAN1_HTH
HIRAN
DUF678
Motif
Other DBs
NCBI-GeneID:
7466190
NCBI-ProteinID:
XP_024451636
LinkDB
All DBs
Position
2:complement(22676062..22686999)
Genome browser
AA seq
1008 aa
AA seq
DB search
MLRGRESLIRLVGKRRRFLPNRKSLLSDSTSIISHSHPPQTPLNLGKTDENEDGIIMSME
SEQKSKSPQSSDSVTCPVCSSKLAAQDHIINSHLDACLTRGTKRKLTQRTLFQLNFCSQP
MVCSRSSDVKKLGTGNVQEDAAVGFDNSTAVDENEGNLGTLVPMGEAVLGTSMDGSPMKQ
KLIDDDGINSRVDSSLLNLRSEFTKCIEAVTVDDISGETALGTSAGGSTMKQKLIDDDRI
NGQVDPSLLNLRSEVMKSIEAVPVGDISGVFLETFIVGRRFSVEKELNLGANICLLRETD
NAKDPNAIQVLLADSRCCKVLGYLPRELAQYLSPLIDKYSLTFKGCITSVPKHYLDVVPI
QIECCEVMLQNNKDHTEIEDFTCSWKNVLHVAESAKNYPPSMTKYQQNFWVLIQEVLKSN
PHLFTNDEKMFLESFISLSDDSQRLFVRLYTRKGPWFRMSNISYPEVTDSQQAVKDLSAM
GYMCSFKGVDELQENDMEKILNLLTVSELREIASMSKNGTRVTRKQDLIASVFSSYEDGV
CPFLPIAILDRTGICIKISSKAESLIWRTERLFFLNGEQDLSAFLLVDLGIIKYPAYHCI
ISEQIFSARSDLIAYEEAIEVAQMMDESLDENKSESVLRCIKIAESRMSHTKASHSTASE
LVTAFFSCFSASWVYSKVVFLGVSFLERERRYKDAINLLKRLLFNFTCDGRRGNWTLRLS
IDLEHMGCPNESLLVAEDGLLDPGVRAGSRIALQRRVLRLGKPPRRWKAPSFSSFIKRKI
REVHIQGRPLNCEAGIKSRFYGEDGAQCGVEQLALQYYAGEGGGWQGVHTESGIWLTIFA
LLMWDIIFSDLPSVFRNRFQTAPLDLETDNFYPARKSLIESQLQKIYDGTAEMILITSWE
LHSGTACRGVNWDRHSLPELRAAVTCVGGPCLASLCRHLAQDYRSWSSGMPDLLLWRFHG
EYKGEAKLVEVKGPRDCLSEQQRAWLLLLMDCGFNTEVCKVSIMPLST
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atgttgaggggaagggagagcttgatccgattggttggtaagcgccgaagattcctcccc
aatcgtaaatctcttctttccgattccacttccattatctctcactctcaccctcctcag
acgcctttgaatttgggaaaaacggatgaaaatgaagatggaataataatgtcaatggag
agtgaacagaaatccaaatcaccgcagtcttcagattcggtaacttgccctgtttgttcc
tctaaacttgctgctcaagaccacatcatcaactctcatttagatgcatgcctaactaga
ggaaccaaacggaaattgacgcagcgcaccctcttccaactcaacttctgctcacaacca
atggtgtgtagtaggtctagtgatgtaaagaagttgggaacaggaaatgtacaggaggat
gcggcagttggttttgacaactctactgcagttgatgaaaatgaaggtaatttaggcaca
ttggttccaatgggggaggctgttttaggaactagcatggatggttcacctatgaaacaa
aaactgattgatgatgatgggatcaacagccgagttgattcctctttgttgaatttgaga
agtgagttcacgaaatgtattgaggcagtaactgtggatgacatatcaggggagactgct
ttaggaactagtgctggtggttcgactatgaagcaaaaactgattgatgatgatcggatc
aatggccaagttgatccctctttgttgaatttgagaagtgaggtcatgaaatctattgag
gctgtacctgtgggtgacatatcaggggtgtttcttgaaaccttcattgttggacgtaga
tttagtgttgaaaaggaattaaatcttggtgcaaacatctgtcttttgagagagacagat
aatgctaaagatcccaatgctatccaggttcttttggcagattccagatgctgtaaagtg
ctgggttatctcccccgagaattagctcaatatttgtctcctctaattgataagtactca
ctgacctttaagggatgcataacatctgttccaaaacattatcttgatgttgttcccatt
caaatcgaatgttgcgaagttatgttacaaaacaataaagaccatactgaaattgaggac
ttcacatgttcatggaaaaatgttcttcatgtggctgaatctgccaagaattatccgcct
agtatgacgaaatatcaacaaaacttttgggtgttgatacaagaggttttaaaaagtaat
ccccatcttttcaccaatgatgaaaaaatgtttttagaatcatttatttctctatcagat
gacagtcagaggctttttgttcggctctatacacgtaaaggaccatggtttcggatgtcc
aatatttcatacccagaagttactgattctcagcaggctgtcaaggatctttctgcaatg
ggttatatgtgctcctttaaaggagtggatgaactacaagagaatgacatggaaaagatt
ttgaatttactcaccgtgtctgagctacgtgaaattgcatccatgtccaagaatggtact
cgtgttacaagaaaacaggatcttattgcatctgttttttcatcctatgaagatggagta
tgcccattcctaccaatcgctattttggatagaacaggaatttgtattaagatatcttca
aaagctgagtcccttatctggcgcactgagagacttttcttcctgaatggagagcaggat
ctttcagcattcctacttgttgatttgggcatcatcaagtatccagcataccactgcata
atatcggaacaaattttctcagctcgaagtgaccttatagcttatgaagaggcaattgaa
gtggcacaaatgatggatgaatctcttgatgaaaacaaaagtgaatcagtacttagatgc
ataaagatagctgagtctcgtatgtctcatactaaagcaagtcactcaacagcctctgaa
ttagtgactgcttttttctcatgcttttcagcatcctgggtatactctaaagtggtcttt
ctaggagtttcttttcttgagcgcgagcggaggtacaaggatgcaattaatttgttgaag
aggttgctttttaatttcacttgtgatggaagaagggggaactggacactgagattgtct
attgatttggagcacatgggctgtcccaatgagagccttttagttgctgaagatgggtta
ctggatccaggggtacgtgctggttcaagaattgcattgcaaaggcgtgttcttcgcctg
ggaaaaccaccaaggcgctggaaagctcctagtttctcatcgtttatcaagaggaagatc
agagaggttcatattcaaggaagacctttgaactgtgaagctggaataaagagcagattc
tatggagaagatggggcacaatgtggagttgagcagcttgctttacagtattatgctggt
gaaggcggtggatggcagggtgttcatacagagagtggaatttggttaacaatttttgca
cttcttatgtgggacattatattttctgatttaccaagtgtcttccgcaacagatttcag
actgctcccttggatttagagactgataacttctatccagcaagaaagagccttatagaa
tcccagttgcagaaaatttatgatggcacggcagagatgatcctcatcacatcatgggaa
ttgcattcaggaacagcttgtaggggtgttaattgggaccggcattctctcccggaactt
cgagccgctgttacctgcgttggaggcccttgtttggcctctctctgccgacaccttgct
caagattatcggagctggtccagtggaatgccagatttgttgctgtggcgcttccatgga
gagtacaaaggtgaagccaagcttgtcgaagttaaaggccccagggattgcctctctgag
cagcaacgagcatggttgctgctactaatggattgtgggttcaacactgaagtatgtaaa
gtaagcattatgccattatccacgtga
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