Populus trichocarpa (black cottonwood): 7466833
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Entry
7466833 CDS
T01077
Name
(RefSeq) LOW QUALITY PROTEIN: general transcription and DNA repair factor IIH subunit TFB1-1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03022
Basal transcription factors
pop03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
7466833
09124 Replication and repair
03420 Nucleotide excision repair
7466833
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7466833
03400 DNA repair and recombination proteins [BR:
pop03400
]
7466833
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
7466833
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
7466833
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
GRAM
SHOCT
Motif
Other DBs
NCBI-GeneID:
7466833
NCBI-ProteinID:
XP_052308895
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All DBs
Position
5:complement(3873643..3881030)
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AA seq
603 aa
AA seq
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MASGQVSKRVKYKSSVKDAGTPGRLFLTLERLMFKPNSPNSATKLNMEFRFIKNHRYTKE
GSNKAPMLNLTSSQGMNYIFEFESYDDLHVCKECVGKALSKTGETPKPVDTSEVPSEQPS
TEELLSRMNMLRENSELQKLHKRFVSDGVLTEAEFWATRKKLLGGNTSKKSKQRTGLKSV
MLSDTKPSTDGRTNKVTFTLTPEIVREIFAEKPAVHQAYLTLVPKKMSERDFWSKYCRAE
YLQHAKNANAAAAAAAEAAEDEELALFLKPDNILASETRWKIRGVDPTLDMEADEGDDYT
HLPDHGIVRDGSKEITELQHELCRRTLSQDLNRHAAVVLQGTPIDEEQLKDTQTVAEALE
RSKQGQNTSNEEADINANQDRLSRNLKMMEIDDLQASIDLPLAPLSIKDPRDYFDSQQAS
ALKTSRDTSIGNDPVRCTLSVEESYASLRDSISHIKNTGLVDPMVTPEVAAKVLLVLTHN
ISSTKYDLGKNPGLSVLDTLPNSIKEELMYHWTSLQELLRHYWSSYPITTMYLYNKVSRL
KDAMSKIDSQLQELKESVQSDLRHQVTLLIRPMQQALEVAMQHYDADMQKRSSXSGERSN
GYT
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcgggcaagtgtcaaaacgagtcaagtacaagagctcagtgaaagacgctggc
actcctggtcgactatttttgactttggagaggttaatgttcaagcctaacagtcctaat
tctgctacaaagcttaatatggagtttagattcattaaaaatcataggtacactaaggag
ggatcaaataaagcaccaatgcttaatctcacttcgagtcagggtatgaattacatattt
gagtttgaaagttatgatgatctccacgtttgtaaagagtgtgtgggcaaagccctttcg
aagaccggagagacaccaaagcctgtagacacttctgaagttccctctgaacaacctagt
acagaagaactgctttccaggatgaatatgctgcgagaaaatagcgagttgcagaagctt
cataagcggtttgtgagtgatggtgtgttgacagaagcagaattttgggcaactaggaag
aagttgcttggtgggaacactagcaaaaagtcaaaacaacggacaggccttaaaagcgtc
atgctttcagacaccaagccctcaactgacggtcgaacaaacaaagtcacatttactttg
acgcctgagattgttcgtgagatttttgcagagaaaccagcagttcaccaagcatacttg
actttagttcccaaaaagatgtcagaaagggatttctggagcaaatattgtagagcagaa
tacctccagcatgcaaaaaatgctaatgctgcggcagcagcagcagcagaagctgctgaa
gatgaggagcttgctcttttcctgaaacctgacaatattttggccagcgaaactcggtgg
aagatcagaggtgttgatccaactctagacatggaagctgatgaaggggatgattataca
catcttccagatcatggcatcgtccgtgacggtagcaaggaaataaccgaattgcagcat
gaactatgtagaagaactctgtcacaggacctaaacaggcatgctgctgttgttcttcaa
ggaacacctatagatgaggagcaattgaaagacacacagactgtagcagaggcacttgaa
cggtcaaaacagggacagaatacttcaaatgaagaagctgatatcaatgcaaaccaggac
agattgagtagaaatttaaaaatgatggaaattgacgatcttcaggcgtcaattgatctt
cctttggcaccgctttctatcaaggatccaagggattactttgattctcaacaagctagt
gctcttaaaacttccagagataccagtatcggaaatgatccagtaagatgcaccctgagt
gtggaagaatcatatgcttctttgagggactctatttcccacataaaaaacacaggattg
gttgatcccatggttacacctgaagttgctgctaaggtccttttggtcttgacccacaat
atctcaagcaccaaatatgatcttgggaagaatcccgggctaagtgttttggacacgttg
ccaaattcaattaaagaggagctgatgtatcactggacgtctcttcaagagttattgaga
cattactggtcatcatatccaatcactactatgtatctttataataaggtaagcaggttg
aaggatgcaatgtcaaaaattgattctcagctacaggagctgaaggaatctgtgcagtca
gatcttcgacatcaggttactctattaattcgaccaatgcaacaggctctagaggtagct
atgcaacattatgatgcagacatgcagaagagatcatcgtgaagtggagagagatcaaat
ggatatacctag
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