Populus trichocarpa (black cottonwood): 7466860
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Entry
7466860 CDS
T01077
Name
(RefSeq) protein CHROMATIN REMODELING 24 isoform X1
KO
K20093
DNA excision repair protein ERCC-6-like [EC:5.6.2.-]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
7466860
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Centromeric chromatin formation proteins
SAC (spindle assembly checkpoint) factors
Others
7466860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
AAA_34
GCOM2
Motif
Other DBs
NCBI-GeneID:
7466860
NCBI-ProteinID:
XP_024458183
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All DBs
Position
5:4311928..4321903
Genome browser
AA seq
1102 aa
AA seq
DB search
MADLSKSTNKKPVSLNHRHHRLLQDLSAPPKQPQSATPSEEDEEEESVFNVKLEGRRRFC
KAEAEDDSIPNFCGITDFDSSPEEEKPTKVKIEGRRRLCKVSFGDNGDGESREEVKTDSS
FDGIADFDSPIPSKNVGDCDNNRGVNEIKDILNDLTSRLDLLSIEKRRMPENGNVVKKVD
VVEYASAESSFSSSSGPSDSSSNVNKNFVEAYEDGHLLSESFADEVDSKGNDICKGLKKN
EYGRVDEKLVPVGKSIASNVVEEEGDVQIVSDRDDYVTRVEKTNKVALKVKKNEPTRFHE
KLRSVGRSSLLSLRDEPEDKGDDCEVLTSKKVVKKVGRPDAIAKYNLLSDESSVTDVLDN
HADSEDDSCITLPGPKSTYKLSGTIAKMLYPHQREGLRWLWSLHCQGKGGILGDDMGLGK
TMQICSFLAGLFHSKLIKRALVVAPKTLLSHWIKELSVVGLSAKTREYFGTSLKARDYEL
QYILQDKGILLTTYDIVRNNSKSLRGDHYFIDDESEDSYIWDYMILDEGHLIKNPSTQRA
KSLLEIPSAHCIVISGTPIQNNLKELWALFNFCCPGLLGDNKWFKETYEHPILRGNEKNA
SDREKRIGSTVAKELRERIQPYFLRRMKNEVFKEDDATTAKLSRKNEIIVWLRLTACQRQ
LYEAFLRSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDLLEGMESMLNPEDAAVA
EKLAMHLADVADRTDTDFQEKHDNISCKISFILSLLDNLIPEGHNVLIFSQTRKMLNLIQ
ESLVSNGYEFIRIDGTTKATDRTKIVSDFQEGNGAPIFLLTSQVGGLGLTLTKADRVIVV
DPAWNPSTDNQSVDRAYRIGQMKDVVVYRLMTCGTVEEKIYRKQIFKGGLFRTATENKEQ
IRYFSQQDLRELFSLPKQGFNISLTQQQLHEEHDSQHKMDEFLESHIKFLETQGIAGVSH
HSLLFSKTATVQVAQEEEDEIRKKVSTMVGNSSSSYSLERDVDGAVHAFNPKDVNLKKKS
SSPDSVGKLTESEIKERINRLSQILGNKVTISRLPDQGAKLQKQIGELNSELNKLRMETA
TEREGIISLDDLTGEFERRLNV
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atggcggatctttcaaaaagcaccaacaaaaaaccagttagtctgaaccaccgccaccac
cgcctgctccaagacctctccgctcctcccaaacaaccacagtcagccacaccctcagag
gaggacgaggaagaagagagtgtattcaatgtgaagctcgaaggacgacgtcgtttttgc
aaagctgaagcagaggatgatagcatccctaatttctgtggaatcactgattttgattct
tctcctgaagaggagaagcctacgaaggttaagatcgaaggaagacggagactttgcaaa
gtctcttttggagataatggggatggtgagagtagagaagaagtgaaaactgattctagt
tttgatggtattgctgattttgattcgcccataccgtccaaaaatgttggtgattgtgac
aataataggggggttaatgagataaaagatattcttaatgatttgacctcaaggcttgat
cttttgtcgattgagaaaaggagaatgcctgaaaatggtaacgtggttaagaaagttgat
gtggttgaatatgcgagtgctgagtcttcgttttcttcatcttctggcccatctgattcc
tcatcgaatgtgaataagaattttgtggaggcgtatgaagatggtcatttgctgagcgag
tctttcgctgatgaggttgatagtaagggcaatgacatttgtaaagggctaaagaagaac
gaatatggaagggtggatgaaaagttagtccctgtgggaaaatctattgcgtccaatgtt
gtagaagaggaaggcgatgtgcagattgtctctgaccgtgatgactatgtcactagggtg
gagaaaactaataaagttgctctaaaagtgaagaaaaatgaacccacaaggttccatgag
aaattgagatctgtaggacggtcttctttgcttagtcttcgagatgaaccagaggacaag
ggagatgactgtgaggttttgaccagcaaaaaggtggtcaagaaagttgggagacctgat
gccattgctaagtacaatttattatctgatgaatctagtgtgactgatgtgttggacaat
catgcagattcagaggatgatagttgcattacattacctggaccaaaatctacatacaaa
ttatctggtacaattgcaaaaatgctgtatcctcatcagcgtgaaggtttaagatggctc
tggtctttgcattgtcagggtaagggtggaatcttaggagatgacatgggcttggggaaa
acgatgcagatttgcagctttctagcaggtctcttccattccaaattgattaagagggca
ttggttgtggcccctaaaacactgctctcccattggattaaagaactgtctgttgtgggg
ctttctgcgaagactagagaatattttgggacatctttaaaagctcgggactatgagctg
caatatatacttcaggacaaaggaattctccttacaacatatgatattgtgcggaacaac
tcaaaatccttacgaggggatcattactttatcgatgatgaaagcgaggatagttacata
tgggactatatgattcttgatgagggacatctcataaaaaatcctagtactcagagggct
aaaagtttgctagagataccaagtgctcattgtattgtcattagtggcactcccattcaa
aacaatcttaaggaattgtgggccttgttcaacttctgttgtcctggtctacttggtgac
aacaaatggtttaaggaaacatatgagcatcccatacttcgtggaaatgaaaaaaatgct
tctgatagggagaagcgtattggttcaacggttgcaaaggaattgagagaacgcattcaa
ccttactttttgcgccgtatgaagaatgaagtattcaaggaagatgatgctacaactgct
aaactttcccgaaagaatgagatcattgtgtggctcagactaactgcttgtcagcggcaa
ctatatgaagcctttctgcggagtgaaattgttctttcagctttcgatggctcgccattg
gctgccctaacgattctgaagaaaatatgtgatcacccgcttctcttgacaaaaagagca
gccgaggatttgttggagggaatggagtcaatgctaaatccagaagatgcagctgtagca
gagaaattggcaatgcatctagctgatgttgctgacagaactgacactgactttcaagag
aagcatgacaacatctcttgcaagatctcttttatattgtcacttctggataatttaatt
ccagaagggcacaatgttcttatattctctcaaactcgcaagatgcttaatctcatccag
gaatccctggtatccaatggttatgagttcatacgcatagatggtacaacaaaagctact
gacagaacaaaaattgttagtgacttccaagaaggcaatggggctcctatatttctccta
acatctcaagttggtggtcttggtcttacacttacaaaagcagaccgtgtgattgtggtt
gatcctgcttggaatcctagcacggataaccagagtgttgatcgtgcatatcgaattggg
caaatgaaggatgttgtcgtatacaggctaatgacttgtggaactgttgaagagaaaatt
tataggaagcagatattcaaggggggattatttagaacagcaactgaaaacaaagaacaa
attcgatactttagccagcaggatcttcgggagctattcagcctcccaaagcaggggttt
aatatttccctcacacagcaacagttacatgaagagcatgacagccagcacaaaatggat
gaatttctggaatcccacataaaattcttagagactcaaggtatagcaggagtaagtcac
cacagcctattattctcaaagacagcaactgtacaagttgcacaagaagaagaagatgag
ataaggaaaaaggtatccacaatggtgggaaattcatcatcaagttattcacttgaacgt
gatgttgatggggctgtgcatgctttcaatcccaaggatgtaaatctgaagaagaaaagc
tcttccccagatagtgtgggtaaattgacagaatctgaaatcaaagagagaatcaatcgg
ctgtcacaaatacttggaaataaggttaccatttcaaggttaccagaccaaggagcgaaa
ctacaaaagcagattggcgaattaaattcagagctcaacaagctgagaatggagacagca
acagagagagaagggatcatcagtctggatgatttaactggggaatttgaaagacgattg
aatgtatag
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