Populus trichocarpa (black cottonwood): 7467031
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Entry
7467031 CDS
T01077
Name
(RefSeq) E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8
KO
K22651
E3 ubiquitin-protein ligase RNF4 [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7467031
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
7467031
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
7467031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-RING_2
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
zf-rbx1
zf-Nse
RING_XB3-XBAT31
zf-RING_4
zf-RING_6
Sina_RING
zf-RING_11
zf-RING_10
Rtf2
Prok-RING_4
TRAF3_RING
Zn_ribbon_6
Motif
Other DBs
NCBI-GeneID:
7467031
NCBI-ProteinID:
XP_002297939
UniProt:
B9GK58
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All DBs
Position
1:6516922..6519190
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AA seq
252 aa
AA seq
DB search
MNLLENFDNNMIFVENLDDNKVFLYHGDNTMDLLGNTDRLEDDLWEAERSYFQHSNLNYP
PPIQNNMPLHGMYFPCHPRNFQAEVYGLTRQHQTAQDVEVIDDDIAIISPSMFDQARKKA
RRNTDAVRENINIVNQARSVLQFHGLLSQPVPSPQLPGLCQTMPPPQFPGFSQTEPPAQV
SGLSQAVPPPAAPAFRCPICMDELQEATSTKCGHVFCKNCIKKALAVQKKCPTCRMKCRA
KSIYRIFLPTVL
NT seq
759 nt
NT seq
+upstream
nt +downstream
nt
atgaatttactggagaattttgacaacaacatgatttttgtggagaacttagacgacaac
aaggtgtttctgtatcacggagacaacactatggatttactggggaatacagatcgtctg
gaagatgatttgtgggaagccgagagaagttactttcagcactctaatctcaactatcca
cctccgattcagaacaatatgcctctccatggcatgtactttccttgtcatcctcggaat
tttcaagctgaagtgtatggtctgaccagacaacatcaaactgcacaagatgttgaggtc
attgatgatgatattgctataatctcgcccagcatgtttgaccaagccaggaagaaagct
aggagaaatactgatgcagtaagggaaaacataaatatcgtcaatcaggctaggagtgtg
ctccaattccatggattgttgtcccagcctgtgccatcaccccaattacctggattgtgt
caaactatgccaccaccccaattccctggattttctcagactgaaccaccagcccaagtt
tctggattgtcccaggccgtgccaccaccagcggcacctgcatttcgttgcccaatttgt
atggatgagttacaagaagcaacatcaacaaaatgtggtcatgttttctgcaagaactgc
attaaaaaagcactagctgttcagaagaagtgccctacttgcaggatgaaatgcagagcg
aaatccatctacaggatctttcttcccacagtcctataa
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integrated database retrieval system
