Populus trichocarpa (black cottonwood): 7467218
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Entry
7467218 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7467218 isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
7467218
Enzymes [BR:
pop01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
7467218
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
Zeta_toxin
Motif
Other DBs
NCBI-GeneID:
7467218
NCBI-ProteinID:
XP_024451360
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Position
2:8219210..8225331
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AA seq
683 aa
AA seq
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MGSGKILCTILSLFSQFMAAFSNLQQNENPSMGFHGGEKGTGSSLLSEVVQLHIQKDYVV
LDNGILQVTLSNPGGHVTGIQYNGLENLLETDNGESDRGYWDVVWSGEGVTRKKGNLDRL
DGTNLTVVVESEEKVEISFTRMWNSSLQAKVVPLNFDKRYVMLRGSSGFYTYAIYEHLRG
WPAFDLDNTRIVFKLTRQKFRYMAIADNRQRYMPLPEDRSPERGQTLAYPEAVLLVHPVE
PEFEGEVDDKYAYSCESKDISVHGWISADPLVGFWQITPSHEFRTGGPLKQFLTSHVGPT
NLGVMHSTHYAGADVTIKIGPNEPWKKVYGPVFAYVNSLSDGRDPLSLWKDAKKQMMNEV
HKWPYDFIASEDFPPSKQRGSVGGRLLVLERYVSNATISAEGAYVGLAAPGEAGSWQLES
KGYQFWTKTDEGGNFTINGIRPGDYNLYAWVPGFIGDYKFTSVININSGSNIDIGDLVYE
APRNGSTLWEIGFPDRSAAEFYIPDANPKYINKLYLKQERYRQYGLWERYAELYPKADLV
FTVGKSNHTTDWFFAQVTRKKDNTTYEGTTWQIKFLLDEVDERAAYKLRMALATANVAEL
EVRVNEPNANPVFSTGEIGKDNTIARHGIHGLYRLFNVDIPGAQLLIGNNTIFLTQTASI
SPFQGVMYDYIRLEGPPPPHKAL
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgggttctggcaaaattttgtgcacgatattgtctttgttttcacaattcatggctgca
ttctctaatttgcagcagaatgagaatccaagcatgggttttcatggaggtgagaaagga
actggcagcagcttgttgtccgaagtggtgcagttgcatattcaaaaagactatgtggtt
ttggacaatggcatactccaggtcacactatcaaatccaggagggcatgtcacgggaata
cagtacaatggcctcgagaatttgctcgaaactgacaatggtgaatctgatagagggtac
tgggacgttgtttggagcggggaaggagtcacacgaaaaaagggtaatttggacagactg
gacggaaccaatttaactgtagtagttgaaagtgaagaaaaagttgagatctccttcacg
aggatgtggaattcctcacttcaggccaaggttgtccccttgaacttcgataaaagatac
gtaatgcttcgtgggtcatcaggattctacacatatgccatttatgaacatttgaggggc
tggcctgcttttgatcttgataataccaggatcgtgttcaagcttactaggcaaaagttt
cgctatatggctatagcagacaacagacaacgttatatgcccctgcctgaagaccggtca
ccagagagaggacagactctagcctatccagaggcagtattacttgtccaccccgtagag
cctgaatttgaaggagaggtggatgacaaatacgcatattcctgcgagagcaaagacatt
agtgttcacgggtggatatcggccgatccgcttgttggtttctggcaaataacaccgagc
catgagttcagaacgggtggacccctcaaacaattcctaacttcccatgtgggccccact
aatcttggtgtaatgcatagcactcattatgcgggagcggacgtcacaataaaaatcggg
cctaacgagccatggaagaaagtgtacggcccagtttttgcttacgtcaattctctgtcg
gatggaagggacccactctcactctggaaagacgctaaaaaacagatgatgaatgaagtt
cataagtggccctatgacttcatagcttcagaagattttccaccgtcaaaacaacgcggt
agtgtcggtggcagattactggtcctagagaggtacgtttccaatgcaacgatatctgca
gaaggtgcttatgtggggctggcagccccgggagaagctggctcctggcagctagaatcc
aagggctaccaattttggaccaaaacagatgaaggtggaaatttcacaatcaatggcata
cggcccggtgactacaatctttatgcatgggtccctggttttattggagattacaaattt
acttctgtcattaacataaactcaggtagtaacattgatatcggtgatcttgtatatgag
gctccaaggaatggctccacattgtgggaaataggtttccctgatcgttctgccgcagag
ttttacattcctgatgcaaacccaaaatatatcaacaaactttatctcaaacaggaaagg
tatagacagtatggattatgggaaagatatgcagagttatatcccaaagcagatttggtt
ttcacagttggcaagagtaaccatacaacagattggtttttcgctcaagttacaaggaag
aaggataataccacgtatgaaggcactacatggcaaataaagttcttgctggatgaagtg
gatgagcgcgcagcatataagctacgcatggcgcttgcaacagctaatgttgccgaattg
gaggttcgggtgaatgagccaaatgcaaatcctgtattttcaaccggagagattggcaag
gataacacgatcgcaagacatgggattcatgggctttacaggctattcaatgttgatatt
cccggagcccagcttctgataggaaataataccatttttctgacacaaacagccagtatc
agccctttccaaggagttatgtacgattatattcgcttagaaggtccaccaccaccacat
aaagccctttag
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