Populus trichocarpa (black cottonwood): 7467219
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Entry
7467219 CDS
T01077
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
7467219
Enzymes [BR:
pop01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
7467219
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
EMC7_beta-sandw
Motif
Other DBs
NCBI-GeneID:
7467219
NCBI-ProteinID:
XP_024451365
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Position
2:8229428..8233725
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AA seq
643 aa
AA seq
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MSTPRVQLLIEDQHVVMDNGILQVTLSNPGGIVTGIQYNGIDNLLEALDLETNRGYWDLV
WSQAGSTGTTGTFDVFEGTTFRVIVENEEQVEISFTRTWDPSLEGKFVSLNLDKRFIMLR
NSSGFYSYAIFEHLADWPPFNLPQTRIVFQLRKDKFHYMVVADNRQRFMPLPDDRQPERG
EPLDFPEAVLLVDPVEPEFKGEVDDKYQYSCENKDLHVHGWMCFDPPTGFWQITPSSEFR
SGGPLKQNLTSHVGPYTLAMFLSAHYAGEDLVLKLNPGEPWKKVFGPVFMYLNSVMDKDN
ALSLWDDAKEQYLKEVHCWPYSFPASEDFPCSDQRGKISGRLQVLDRYISHECIAANDAY
VGLAPPGDVGSWQRECKGYQFWTKTDGDGSFCIGDIRTGDYNLYAWIPGFIGDYRNDTVI
TVTAGCEIDVGDLVYEPPRDGPTVWEIGIPDRSAAEFYIPDPNPKYINKLFINHPDRFRQ
YGLWERYADLYPDGDLVYKVGHSDYKKDWFFAQVNRKKDDGTLEGTTWQIRFKLDNVDQS
GAFKLRLALATANVAELQVRINDPKIDPPHFSTGEIGHDNTIARHGVHGLYRLYNVDVPG
TTLVEGENTVFLTQTPRTSPLQGIMYDYIRLEGPPPPDSKETL
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactccaagggtgcagttgctcattgaagatcagcatgtggttatggataacggc
attcttcaagtcacactatcaaacccaggaggaatcgttactggcattcagtataatggt
atagacaatttgcttgaagctcttgacttggaaactaacagaggatattgggaccttgtt
tggagtcaagcaggaagcacaggaacaacaggaacttttgacgtgtttgaaggaacaact
tttagggttatagtggaaaatgaagagcaagtagaaatctcattcacaagaacatgggat
ccctcccttgaaggcaaattcgtttccttaaacttggacaaaaggttcataatgcttagg
aattcttcaggattttattcctatgccatttttgagcatttagcagactggcctcccttc
aacctcccgcaaaccagaattgtcttccagctcagaaaagacaagtttcactacatggtc
gtagcagacaacaggcaaagattcatgccacttcctgatgacaggcaacctgaaagaggt
gagcccctagactttcccgaagcagtcttgcttgttgacccagtggagccagagttcaaa
ggagaggtagatgacaagtatcaatactcatgtgagaacaaagatctccatgttcatggg
tggatgtgctttgatccacccacggggttctggcaaatcacacctagcagtgagttccga
tctggtggaccactcaagcagaaccttacctcccatgttggaccctatactctcgcaatg
tttctcagtgctcattatgctggagaggaccttgtgctaaaactcaacccaggtgaaccg
tggaagaaggtttttggaccagtttttatgtatcttaactctgttatggataaagataat
gcactttccctgtgggatgatgctaaagaacagtatttgaaggaagtccactgttggccg
tacagcttcccagcttctgaagattttccatgctccgatcaacgtggtaaaatcagtggc
agattacaagtcctagataggtatataagccatgaatgcatagctgctaatgatgcttat
gtggggctagcaccgccaggagatgttggatcgtggcaaagagaatgcaagggataccaa
ttctggaccaaaacagatggggacggctctttctgtattggcgatatacgcactggcgac
tacaatctttatgcatggattcctggtttcatcggcgattaccgtaatgatactgttatt
acagtaactgcaggttgtgaaatcgatgttggtgatcttgtatatgaacctccaagagat
ggtccaacagtgtgggaaataggcatacctgatcgatctgctgcagagttttacattcct
gatcctaacccaaagtatattaacaaacttttcatcaaccatcctgacaggtttagacag
tatgggctgtgggaaaggtatgctgatttatatcctgatggggatctggtatacaaagtt
ggtcacagtgactacaagaaagactggtttttcgctcaagtaaacaggaagaaagatgac
ggtacattagaaggaacgacatggcaaatcaggttcaagctggacaatgtagatcaaagc
ggcgcgttcaagttacgattggcactggcaacagccaacgttgcagaactgcaagttagg
ataaacgatccaaaaatagatcctccccatttttcaaccggagaaattgggcatgacaac
acaatagcaaggcatggagtccatggcctctaccgcctttacaatgtagatgtgccaggc
actacgcttgtggaaggagaaaataccgtgtttctgacacaaacacctagaaccagccct
ttgcagggcatcatgtatgattatattcgcttagaaggccctccaccacctgattccaag
gagacactttga
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