Populus trichocarpa (black cottonwood): 7467220
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Entry
7467220 CDS
T01077
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
7467220
Enzymes [BR:
pop01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
7467220
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Av_adeno_fibre
BsuPI
Motif
Other DBs
NCBI-GeneID:
7467220
NCBI-ProteinID:
XP_024450576
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Position
2:8235134..8244059
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AA seq
640 aa
AA seq
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MSNQGVQLHIQERHVVMDNGILQVTLSKPEGIVTGIQYNGISNLLEVLNDESNRGYWDLV
WSKEGSTGTTGTSDAIKGESFRVVVENEEQVEISFTRMWDPSLEGKLAPLNIDKRFIMLR
NSSGFYSYAIYEHFKEWPAFNLPQTRIVFKLRKDKFHYMAVADNRQRCMPLPEDRLPKRG
EPLAYPEAVLLVNPVEAEFKGEVDDKYQYSCENKDLQVHGWICFNPPVGFWQITPSNEFR
SGGPLKQNLSSHVGPISLAMFLSAHYSGEDMVLKLKPGEPWKKVFGPVFIYLNTLLDDQN
EPRWLWEDAKKQMLIEVQNWPYSFPASEDFPSSEQRGCVNGRLQVQDRFISDYCIPGNGA
CVGLAPPGDIGSWQRECKGYQFWTKADPEGYFSINDIRTGDYNLYAWIPGFIGDYRNDEV
ITITPGCDLDLGDVIYKPPRDGPTLWEIGIPNRSAAEFYVPDPDPKYINELYVNHPDRFR
QYGLWERYADLYPDEDLVYTVGTSDYAKDWFFAQVTRKKDDNSYQGTTWQIKFKLDNVQN
SGSYKLRLALATANVAELQVRINSLETNPWSTGVIGHDNTIMRHGIHGLYWLYNIEVPGS
ELVEEDNTIFLTQTMATSPFQGIMYDYIRLEGPPSSNSDN
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaccaaggggtgcagttgcatatccaagaacgtcatgtggtgatggataatggc
atactccaagtcacgttatccaaaccagagggaattgtcactggaatacaatataatggc
atcagcaatttacttgaagttctcaatgatgaatccaatagaggatattgggatcttgta
tggagtaaagaaggaagcacaggaaccacaggaacatccgatgcgattaaaggagaaagt
tttagagtggtggtagaaaatgaggaacaagtagaaatctcattcactagaatgtgggat
ccttcactagagggcaagcttgctcccctgaacatagacaagaggtttattatgcttcgt
aattcctctggcttctactcctatgccatttatgagcacttcaaggaatggcccgctttc
aaccttccccagaccaggattgtattcaagcttaggaaggacaagtttcactacatggca
gtggccgataacaggcaaagatgcatgccattaccagaggaccggttaccaaaaagaggc
gaaccccttgcttaccctgaagccgtcctacttgtcaatcctgtggaggctgaattcaaa
ggagaggtggatgataaataccaatactcatgcgaaaataaagatcttcaggttcatgga
tggatatgcttcaacccccccgttggattctggcaaatcacacccagcaatgagttccga
tctggaggacctctaaagcaaaaccttagctctcatgttggtcccatcagtcttgctatg
tttcttagtgcccattattcaggggaggatatggtgctgaaactaaaaccgggtgagcca
tggaagaaagtttttggccctgtttttatctatctcaatactttgttggatgatcaaaat
gaaccacgttggctatgggaggatgccaagaaacagatgttaattgaagttcagaattgg
ccctacagtttcccagcttcagaggattttccatcatcagaacaacgtggttgcgtcaat
ggtcgattgcaagttcaagacaggtttattagtgattactgtataccaggcaatggtgcc
tgtgtggggttggcacctccaggagatattggatcatggcaaagagaatgcaagggctat
cagttctggactaaggcagatccagaaggatatttttccattaacgatataagaactggt
gactataatctttatgcatggattcctggttttattggagattaccgaaatgatgaagtt
attaccataacaccaggttgtgatctggacttgggtgatgttatatacaagcccccgaga
gatggccctacattgtgggaaataggcataccgaaccgttctgccgcagaattctacgtt
cctgaccccgatcctaagtatatcaatgaactttatgtcaatcaccctgacaggttcagg
cagtacggattatgggaaaggtatgcagatttataccctgatgaagatttggtttacacg
gttggtacaagtgactacgcaaaagattggttcttcgctcaagttacaaggaagaaagat
gacaattcatatcaaggaactacatggcagatcaagttcaaacttgacaatgtacaaaac
agtggatcatacaaactacgattagcacttgcaactgcaaatgttgctgaattgcaggtt
cgcatcaatagtctagaaacaaatccatggtcaactggagtaattgggcatgacaacaca
attatgagacatggaattcatggactctattggctttacaacatagaagtgccaggttct
gagctcgtggaagaggataatactattttcttgactcaaactatggccaccagccctttc
caaggaatcatgtatgactacatacgtttagaaggccccccatcttctaattctgacaac
taa
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