Populus trichocarpa (black cottonwood): 7467397
Help
Entry
7467397 CDS
T01077
Name
(RefSeq) protein CHROMATIN REMODELING 5 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7467397
03036 Chromosome and associated proteins [BR:
pop03036
]
7467397
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
7467397
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
7467397
SLIK complex
7467397
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
Helicase_C
Chromo
CHD1-like_C
HDA2-3
ResIII
DEAD
SWI2_SNF2
Chromo_MIT1
KH_PARP14_5
Motif
Other DBs
NCBI-GeneID:
7467397
NCBI-ProteinID:
XP_024464731
LinkDB
All DBs
Position
9:complement(5342639..5359354)
Genome browser
AA seq
1755 aa
AA seq
DB search
MAFCRNYTTEAVSQSVLEGKVQGQGTGRMLGNEDVDVNSSERELDMNMDAQYESEPDAAG
KLQSDVAADNCAGVSNSELQPSGRRNVAGKWGSSFWKDCQPMATPGASDSRQDSKSEDRN
AEGSEDNVSNGRDGRLESEDEEGQKEVGRGGKGHSDVPADEMLSDEYYEQDGEDQSDLMR
YRGFSKPVDLSSRLQSKPVPIKNNVSRRRSRGLHNSEGYDDDNNDGDGDNEEEDEDAEDD
PDDADFDPDYGALSGHMGGKDKDGESEDSDEEVNSDDWVISDDEDDDDSYYTKKPKGRQQ
GKGGCNTKSAREHTSLRASGRQKRGKTSFEEDEYSAEDSDSDKDFKNMTQRGEHLRKSNA
RSTMSTNIGGRNNEVRTSSRSVRKVSYVESDESEEIGEGKKKNALKDEVEEEDGDSIERV
LWHQPRGTAEDAMRNNRSTEPVLLSYLFDSVPDWKEMEFLIKWKGQSHMHCQWKSFSDLQ
NLSGFKKVLNYTKKVMEDVRYRRSFTREEIEVNDVSKEMDLDLIKQNSQVERIIADRITK
DSSGNVVPEYIVKWRGLSYAEATWEKDVDIAFAQDAIDEYKAREAAIAVQGKMVDLQRKK
GKASLRKLDEQPEWLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLG
FLQNAQQISGPFLVVVPLSTLSNWAKEFRKWLPDMNVIVYVGTRASREVCQQYEFYNDKR
VGQPIKFSALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLLEFSTKNKL
LITGTPLQNSVEELWALLHFLDPDKFRSKDDFVHNYKNLSSFNENELANLHMELRPHILR
RVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELK
KCCNHPFLFESADHGYGGDISTNDSSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQ
MVRMLDIIAQYMSLRGFQFQRLDGSTKAELRQQAMEHFNAPGSDDFCFLLSTRAGGLGIN
LATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVL
DHLVIQKLNAEGRLEKKETKKGSYFDKNELSAILRFGAEELFKEDRNDEESKKRLLSMDI
DEILERAEKVEEKEAGGEQGNELLGAFKVANFCCAENDGSFWSRWIKPDAVAEAEDALAP
RAARNTKSYAEDNQPGRSNKRKKKGSEPPEPQERVQKRRKSDYSAPLAPMIEGASSQVRE
WSHGNLPKRDALRFSRVVIKFGNLNQIDLIAEEVGGTVAAAPPDAQIELFDALVDGCREA
VEVGNLDPKGPLLDFFGVPVKANDLLSRVQELQLLAKRISRYENPIAQFRVLMYLKPSNW
SKGCGWNQIDDARLLLGIHYHGFGNWEKIRLDERLGLSKKIAPAELQHHETFLPRAPNLK
DRANALLEMELAAIGGKKANAKGGRKASMKGRENLLNISVSRDRVKKAKPGSVIVSVQTS
KNRPQRPQRVEQLVKEEGEMSDNEELCEQFKEVKWMEWCEEVMFDEIKTLKRLNKLQTTS
ADLPKEKVLLKIRNYLQLIGRRIDQIVLEYEEERYKQDRMTMRLWNYVSTFSNLSGEKLR
QIYSKLKQEQEEDASAGPSHANGAAYGSLDKDSDPNNFPPLSRNFERQIGYKNESAYAMS
EPINKGHDAGKFEAWKRRRRAEADIQPPLQRPPGTRLSNPNSLGILGAGPPDNRPFFERP
YRVRQTGFTPKQNFT
NT seq
5268 nt
NT seq
+upstream
nt +downstream
nt
atggctttttgcaggaactatacaactgaagcagtttcacagagtgtcctagaaggaaaa
gtgcaaggtcagggtacaggtagaatgttaggcaatgaggatgtagatgtgaattctagt
gaaagagaactggatatgaacatggatgcgcaatatgaaagcgaaccagatgctgcaggt
aagttgcagagtgatgtggctgctgacaattgtgctggtgtgagtaattcagagttgcaa
ccttctggaaggagaaatgtggctggaaaatggggttccagtttttggaaggactgtcaa
cccatggctactcctggggcatccgattccaggcaggattccaagtcagaggatagaaat
gcagaagggtcagaagataatgtatcaaatggaagggatggtagattagaatcggaagat
gaagagggacaaaaagaagtaggtaggggtgggaaaggccattctgatgtccctgcagat
gagatgttgtctgatgaatactatgagcaggacggggaggatcaaagtgacttgatgcgt
tatagggggtttagcaaacccgttgatttgagctctaggttgcaatcaaagcctgtacca
atcaagaataatgtgtccaggaggaggtctagaggtttacacaatagtgaaggttatgat
gatgacaataatgatggtgatggtgataatgaggaagaagacgaagatgcagaagatgat
cctgatgatgcagattttgaccctgattatggcgccttgagtggtcacatggggggcaag
gataaagatggggagagtgaagattcagatgaagaagttaacagtgatgattgggttatc
tcagatgatgaagatgatgatgattcgtattacacaaaaaaacctaagggtaggcaacag
ggtaaaggtggatgtaatacaaaatctgccagagagcacacatcattacgtgcttccggt
cgacaaaagagagggaaaacatcatttgaagaggatgagtattcggcagaggattctgac
agcgacaaagatttcaagaacatgactcaaagaggtgagcatctccgcaaatctaatgct
cggtccactatgtcaacaaacattggtggaagaaacaatgaggttcgcacttcaagtagg
tcagttcgtaaggtatcgtatgttgaaagtgatgaaagcgaagagattggtgaagggaaa
aagaagaatgccctaaaggatgaagttgaagaagaagatggtgactccattgaaagggta
ctgtggcatcagccaaggggcacggctgaagatgcaatgaggaacaatagatcaacggag
cctgttctgttaagctacctgtttgattctgtgcctgattggaaagaaatggagttcttg
ataaagtggaaaggccagtcacatatgcactgccaatggaaatcattttctgacttacaa
aatctaagtggttttaagaaggtactgaactacactaaaaaagtgatggaagatgtgagg
tacaggagatcatttacacgtgaggagattgaggtcaatgacgtgagcaaggaaatggat
ttggatctaatcaagcaaaatagtcaggtggagagaattattgctgatcgaattactaaa
gatagctctggtaatgtcgtgccggagtatattgtcaagtggcgaggactatcttatgct
gaagcaacctgggaaaaggatgtagatattgcttttgcacaagatgctattgacgagtac
aaggcacgtgaggctgcaattgctgtacaggggaaaatggtggatctacagcgcaagaaa
ggaaaagcaagtttaaggaaacttgatgaacagcctgaatggttgagaggaggaaagctt
cgtgattaccagcttgagggtttgaattttctagttaacagttggagaaatgatacaaat
gtcattttagctgatgagatgggtctcggaaaaacagttcagtcagtttccatgcttggt
tttttgcagaatgctcagcagatctccgggccatttcttgttgttgtacccttatcaact
ttgtcgaactgggctaaagaatttagaaagtggcttcctgatatgaatgttattgtatat
gttggtactcgtgctagtcgggaggtttgtcagcaatacgaattttacaatgataagaga
gttggccagcctataaaattcagtgctctgttgaccacatatgaagttgttctgaaggac
aaggctgttctgtccaagattaagtggaattatttaatggttgatgaagctcataggtta
aagaacagtgaagcgcagttgtacacaactcttttggaatttagcaccaagaacaaattg
ctaattactggcactccattgcagaacagtgtggaagagctatgggctctgcttcatttt
cttgatcctgacaagttcaggagtaaggatgattttgttcacaattataagaatcttagc
tcatttaatgaaaatgagctcgctaatcttcacatggaattgaggcctcacattctcaga
agagttatcaaggatgtggagaaatccttgcctcccaaaatagagcgcattttgagggtt
gaaatgtctcctctccagaaacaatactataaatggattttggaacgtaacttccatgac
ctgaacaaaggagttcgtggcaatcaggtttcacttctgaatattgtggtagagttgaag
aaatgctgcaaccaccccttcctatttgaaagtgcggatcatggttatggcggggacatc
agtaccaatgatagcagtaaactggagaggattatcttaagcagtggaaagctggttatt
cttgacaaactactcgtcagattgcacgagacaaaacatcgtgtccttattttctcccag
atggtcagaatgttggatataatagctcaatacatgtcactcagagggttccaatttcaa
aggcttgatggtagcacaaaggctgagttgcgtcagcaggcaatggaacatttcaatgca
cctggtagtgatgatttctgcttccttctttcaactcgggctggcggcttaggcatcaat
cttgcaactgctgacacagttataatatttgattcagactggaatcctcaaaatgaccta
caggcaatgagcagagctcatagaattgggcagcaagaagttgttaacatctatagattt
gtgacaagcaagagcgttgaggaagatatcctagagagagctaagaagaagatggttctc
gaccatttggtgatccaaaaactaaatgcagagggtagattggaaaagaaagaaacaaaa
aaagggagttattttgataaaaatgagctctcagcaattttaagatttggggctgaggaa
ctctttaaagaggacagaaacgacgaagaaagcaagaaaagactcctaagtatggatatt
gatgaaattcttgaaagagcagagaaagtggaggagaaggaagctgggggagagcaaggg
aatgaattgttaggtgcttttaaggttgcaaatttttgttgtgccgaaaatgatgggagt
ttctggagtcgttggataaaaccagatgctgtagctgaagctgaggatgctttagctcct
cgtgctgcaagaaatactaagagttatgcagaggataatcaacctgggagaagtaacaaa
cggaaaaagaaaggttctgagccaccagaaccacaggagagagtgcagaagcgtcgaaaa
tcagattattctgcccccttagcaccaatgatcgagggagcatcctcccaagtgagagaa
tggtctcatggaaatctgcctaagagagatgctttacgcttttctcgtgtggtgattaag
tttgggaacttgaaccaaatagacttgatagctgaggaggttggtggaacagttgcagca
gctccacctgatgcacagatagagctttttgatgctttggttgatggttgtagagaagca
gttgaagttggaaatctggacccaaagggtcctttgttggatttttttggtgtccctgtg
aaggcaaatgatctattgagccgtgtgcaagaacttcagctactagcaaagcgaattagt
cgttatgaaaatcccatagcacagtttcgagtgttgatgtacctgaagccttcaaactgg
tccaagggttgtggctggaatcagattgatgatgcaagattgcttctgggaatacactac
catggattcggcaattgggagaagatacggttagatgaaaggcttggcctttcgaagaag
attgccccagcagaactccagcatcatgagacctttttaccacgtgctccaaatttgaag
gatcgtgctaatgcacttctggagatggaacttgcagctattggtggaaagaaagcaaat
gctaaagggggtcggaaggcctccatgaaggggagagagaatcttctgaacatctctgtt
tcgcgggacagggtcaagaaagcaaagcctgggtctgtaatcgttagtgtacaaacgagc
aagaataggcctcagagaccacagagagttgaacagttagtaaaagaggagggtgagatg
tcagacaatgaggaattatgtgagcagtttaaggaagtaaaatggatggaatggtgtgaa
gaagtcatgtttgatgaaattaaaaccctgaaacgtcttaacaagttgcagactaccagc
gctgaccttccaaaggaaaaagtgcttttgaaaattcggaactatttacagcttattgga
cggagaatagaccagattgtcttagaatacgaggaagagcgttataaacaggataggatg
acaatgcgattatggaattatgtttctactttttcaaatttatctggcgagaaacttcgt
cagatttattcgaaacttaaacaggagcaggaggaagatgcaagtgctggaccctctcat
gccaatggtgctgcatatggttctcttgacaaagacagcgatcccaacaattttcctccc
ctttctaggaattttgagcggcaaattggatataaaaatgaaagtgcctatgcaatgtca
gaaccaataaacaaaggtcatgatgctgggaaatttgaagcgtggaaacgacgcagaaga
gctgaagctgatattcaaccccccttacaaagaccaccgggcacccgcttatccaaccct
aactcgttgggaattcttggggcaggaccacctgataataggcctttttttgagagacct
taccgagtgcggcaaactggttttactccaaaacaaaattttacataa
DBGET
integrated database retrieval system
