Populus trichocarpa (black cottonwood): 7467604
Help
Entry
7467604 CDS
T01077
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
7467604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7467604
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
7467604
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
HECT type E3
7467604
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
7467604
NCBI-ProteinID:
XP_024443584
LinkDB
All DBs
Position
16:6679157..6687727
Genome browser
AA seq
1569 aa
AA seq
DB search
MGNRGQKRAEMVDELPADKRACSSLEFRPSSSNSLIQTQINTETHNAEIHDADMDTSSSG
SASSHSDEEEPEMDSAHGSCDSEGPRHSSLREYQRQRSSGDHSRLKSCLFNLSERTEPSG
QLAALTELCEVLSFCTEDSLSSTMADLLSPVLVRLSRHDSNPDIMLLAIRALTYLCDVFP
RASVFLVRHDAIPAICQRLMAIEYLDVAEQCLQALEKITRDQPLPCLQAGAIMAVLSFID
FFSTSVQRVALSTVVNICKKLPSENFSPFMEAVPILCNLLQYEDRQLVENVAICLIKIAE
RVSQSSEMLDELCKHGLINQATHLVQLNSRTTLSQPVYNGLIGLLVKLSSGSIVAFRTLY
ELNISSILKDLFATYDLSHGISSPHVIDGQGNQVHEVLKLLNELLPTVARNQDAQQLVLD
KEAFLANHPDLLHKFGSDIIPSLIQVVNSGANLYVCYGCLYVINKLVYLSKSDMLLELLK
NTNFSSFLAGVLTRKDHHVLMLALQITETILQKLPDVFVNSFIKEGVFFAIDGLLVPEKC
SQLIFPACNGIHLPLNSNQKSSSKVVMRCLCYAFDTGQSLSASETGTCKLEKDTVENLGK
HIRISYFALESCDSEKGLTDILQKLRALSAELSDLMNMSVKIGSCTQDEEKCYSILCQIM
EKLDGREPVSTFEFIESGIVKILVNYLFNGKYLREKVEPQSTFDDFYVVEKRFEVFARLL
SSSDLSEESPLSALIQKLQGALSSSENFPVILSHASKYRSSFAIIPNGRRTSYPCLRVRF
VRGEGETCLCNYSEDPVTVDPLSSVNTIEGFLSPKVRIKGTEQIESAAQALEPAENVQFK
SPSTANPSEGESSGLMEPDSMAFDLLVMQDNEANLSQPPPELDVNLIQRNPDETLSNDTH
IVSVEDIVQSPSCADDSTKSHCPTSCSNGDAMPKLVFYLEGQQLDRTLTLYQAILQQKVK
ADHEINSTAKLWTQVHTLTYRIAVDTRDDNTQDCPSMAQNSSILDQAVAFMQHPAFFSSM
FNCELPSDLDKSSPTNDILFLLKSLEGLNRFIFHLMSHERIHAFAEGLIDNLDNLRVAAR
PVAQNEFVSSKLTEKLEQQMRDSLAVSMGGMPVWCNQLMNSCSFLFSFETRCKYFQLSAF
GCQQIQIQPSSHNNSGVLRDRLPSAGSLSRKKFIVLRDQVLESAAQMMDRYAHLKVPIEV
VYNEEVGTGLGPTLEFYTLVSKEFQKSGIGMWREDHISFPTIENLQAEYSGIVKSPFGLF
PRPWSPTVDASDGVQFSEVIKKFFLLGQIVAKALQDGRVLDLPFAKVFYKLILQQELNLY
DIQSFDPELGRTLLEFQALVNRKKNMGLVIVENSSSTQDACFWNTRIEDLCLDFTLPGYS
DYILSFDEDHKIVNMDNLEVYVSHIVDATIHTGISRQVEAFKSGFNQVFPIKHLMIFTEE
ELERLLCGERDFWAFNELLDHIKFDHGYTASSPPIVNLLEIIKEFEYEQRRSFLQFVTGA
PRLPTGGLASLNPKLTIVRKHCSNCEDVDLPSVMTCANYLKLPPYSSKDKMKEKLLYAIT
EGQGSFHLS
NT seq
4710 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatcgtggacaaaaacgagcagagatggttgatgaactgccggctgataagaga
gcctgtagttcattggagtttagaccaagttcatccaactcgttaattcaaactcaaata
aatactgagactcataatgctgaaattcatgatgctgacatggatacttcatcatctggt
tcggcatcaagccattctgatgaggaagaacctgagatggattcagctcatggctcttgt
gattctgagggtccaagacatagcagtctgcgtgagtatcagaggcagagatcctctggt
gaccatagtagattgaagagttgtttatttaatttgagtgaaaggacggagccttctgga
cagttagctgctctaacagagttatgtgaagtgctttcgttttgtacggaggattcactt
tctagtacaatggcagacctgttatctccagtacttgttaggctttcaaggcatgacagt
aacccagatataatgctgttggcaataagggctttaacttatctgtgtgatgtgtttccc
cgagcatctgtttttcttgttaggcatgatgctattcctgctatttgtcaaagattaatg
gccattgaatacttggatgtagctgaacagtgtttgcaagcattggagaaaataactcgt
gatcaaccacttccatgcttacaagctggggctatcatggcagttctaagttttatagac
ttcttctctacaagcgtacaaagagttgcactttcaactgtggtgaacatatgcaagaaa
ctgccatcagaaaatttttcacctttcatggaggctgttccgatattatgcaatcttcta
caatatgaggatcgacagcttgttgaaaatgttgctatttgcttgatcaaaatagcagaa
cgagtcagtcagtcatctgagatgctggatgaactatgcaagcatggactaattaatcaa
gctactcatctagtgcaattgaacagccgaacaactctatctcagccagtatacaatggt
ttgattgggctccttgtcaaactttcttctggttcgattgtcgctttcaggaccctgtac
gagctcaatataagcagcattttgaaggacttatttgccacttatgacctctctcatgga
atttcttctcctcatgtgattgatgggcagggcaaccaggtacatgaagtgctcaagttg
ctaaatgagcttctccctactgtagcaagaaatcaagatgctcaacaacttgtgttggat
aaagaggcatttttggctaatcaccctgatctcttgcacaagtttggatcggatataatt
ccttccttgattcaggtggttaattctggtgcaaatctatatgtttgctatggctgctta
tatgtcatcaacaagctagtttatctcagcaaatctgacatgcttctggaattgcttaag
aatacaaatttttcaagcttcttggctggagttcttactcgtaaagatcaccatgtgctg
atgttagccctgcaaattaccgagacaattctccaaaagcttccagatgtttttgtgaac
tctttcatcaaggaaggtgtcttttttgccattgatggccttcttgtgcctgaaaaatgt
tcgcaattgatcttcccagcgtgcaatggaatccatctgccactcaattctaatcaaaag
tcttcttcaaaagtagtcatgagatgtttatgttatgcttttgatactgggcagtctctt
tcagcctcggagacgggaacatgcaagcttgaaaaagacactgtagaaaatcttggaaag
catataagaattagttactttgctttagaatcatgtgactctgagaaaggattgacagat
atccttcaaaagctcagagctctttctgctgaattgagtgatttgatgaatatgtctgtc
aaaattggttcttgcacccaggatgaagagaaatgttactctatattgtgtcaaatcatg
gaaaaacttgatggaagagagcctgtgtctacttttgaatttattgaaagtgggattgtg
aagatattagtgaattacttattcaatggaaaatatctgagagaaaaggtggagcctcaa
agtacatttgatgatttctatgttgtagagaaaagatttgaggtatttgcaaggctatta
tcttcttcagacctatctgaagagtctcctttatcagcattaatacagaaattgcagggt
gcgttatcttcttcggaaaatttccctgttattctgagccatgcatcaaagtacagatcc
tcatttgcaatcatccctaatggacgtcgcacgtcttatccatgcctaagagttcgtttt
gtcaggggagagggcgaaacatgcctttgcaactactctgaagatcctgtgacagtagat
cctctttcttctgtgaatacaattgaaggatttctatctcctaaagttagaataaaagga
actgaacaaatagaatcagctgctcaagctctggagccagcagaaaatgtacagttcaaa
tcaccatcaactgcgaaccccagtgaaggggaaagttcaggacttatggagcctgatagc
atggcttttgatttactagtaatgcaggacaatgaagctaacctatcacagcctccacca
gaactagatgtaaatttgatacagagaaatcctgatgaaacattatcaaatgatactcat
attgtctcagtggaggatatagtgcagtctccttcatgtgctgatgactctacgaaaagt
cattgtcctacatcctgtagcaatggagatgctatgccaaaactggtattttacctagaa
ggacagcagttggaccgaactttgactctttaccaggcaatactccagcaaaaagttaaa
gcagaccatgaaattaacagcacagcaaagctgtggactcaagtacacaccttgacttac
agaatagctgtggacactagagatgataatactcaagattgccctagtatggctcaaaat
tcctctatattagatcaagctgtggcttttatgcagcatcctgcatttttctccagcatg
tttaattgtgaactcccttctgacctggataagtctagtcctactaatgatatattgttt
ctgcttaaaagtttagaaggtttgaacaggtttatttttcatctgatgtctcatgaaaga
atccatgcatttgctgaagggctgatagataatttggataatttaagggttgcagctcgc
ccagtagcacagaatgagtttgtgagcagtaagttgacagagaaattggagcaacagatg
cgggattctctggctgtgtccatgggtggcatgcctgtgtggtgcaatcagctcatgaat
tcatgctcctttttgtttagctttgagactagatgtaaatatttccagctgtcagcattt
ggctgtcagcaaattcagatacagccttcatcacataataattcaggtgtcttgagagac
aggctaccaagtgctggcagtttgtcccgtaagaaattcatagttttacgtgaccaagtt
ctggagtctgctgctcagatgatggaccgttatgcccatcttaaagtacctattgaagtg
gtatataatgaagaagttggtactggtcttggtccgaccttggaattttatactctggtt
agtaaagagtttcagaagtctggcattggcatgtggagggaggatcatatttcatttccc
accatcgagaacttgcaggcagaatactctggaattgtgaagtctccatttggacttttt
cctcgcccatggtcacctacagtggatgcatctgatggagtacagttttctgaggttatt
aaaaagtttttccttctgggacaaattgtagccaaggctcttcaagatggcagggtgctg
gatctaccattcgccaaagtcttctataaacttattcttcagcaggaacttaatttgtat
gacatccagtcctttgatcctgagcttggtaggactttgctagagttccaggctcttgtc
aacaggaaaaaaaatatgggattagtcattgtagaaaactcatcttctactcaagatgca
tgcttttggaacactagaatcgaggatctctgtcttgactttactcttcctgggtattct
gattacattcttagttttgatgaagatcacaaaattgtgaatatggataacttggaggtg
tatgtttctcacattgtggatgctactatacacacaggaatttccagacaagttgaagca
ttcaagtctggatttaaccaggtttttccaattaaacatcttatgatttttactgaggag
gaacttgagcgtttgctatgtggagaacgtgatttttgggctttcaatgagcttttggat
catatcaagtttgatcatggatacactgctagcagtcctcctattgttaatttactggaa
atcataaaagaatttgaatatgaacaacgacgatcatttctacagtttgtaactggggca
cctcggctacctacaggaggcttggcgtctctgaatccaaaattgaccattgtacggaag
cattgcagcaactgtgaagatgtggaccttcccagtgtgatgacttgtgccaattatctg
aagttgcctccctactcgtcgaaagataagatgaaggagaaacttctgtatgccataaca
gagggtcaaggctcattccacctctcgtag
DBGET
integrated database retrieval system
