Populus trichocarpa (black cottonwood): 7467628
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Entry
7467628 CDS
T01077
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
7467628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7467628
03009 Ribosome biogenesis [BR:
pop03009
]
7467628
04131 Membrane trafficking [BR:
pop04131
]
7467628
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pop04147
]
7467628
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
7467628
Ribosome biogenesis [BR:
pop03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
7467628
Membrane trafficking [BR:
pop04131
]
SNARE
SNARE associated proteins
Others
7467628
Autophagy
Aggrephagy
Other aggrephagy associated proteins
7467628
Exosome [BR:
pop04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
7467628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_5
AAA_33
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
AAA_17
AAA_28
Mg_chelatase
AAA_18
ATPase_2
Parvo_NS1
IstB_IS21
ABC_tran
Viral_helicase1
AAA_7
NACHT
AAA_lid_PRS2_C
NB-ARC
TsaE
Vps4_C
AAA_24
DUF815
Zeta_toxin
Zot
Motif
Other DBs
NCBI-GeneID:
7467628
NCBI-ProteinID:
XP_002323472
UniProt:
B9IFP5
LinkDB
All DBs
Position
16:complement(7499096..7504056)
Genome browser
AA seq
802 aa
AA seq
DB search
MSNQAESSDSKGTKRDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPETMEKLQLFRGD
TILIKGKKRKDTICIALADDSCDEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH
ILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCV
VAPDTEIFCEGEPVRREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERIAKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGISNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRFQI
FKSCLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKERRQKEN
PEAMEEDVEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFAE
ASAGSDPFAASAGGADEDDLYS
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaccaagctgaatcctctgactctaaaggaacaaagagggattttagtaccgcg
attttggagagaaagaagtctccgaatcgtcttgttgttgatgaggctattaatgatgat
aactctgtcgtttcccttcatcctgagactatggagaagctccagctctttcggggtgac
accatcttaatcaagggaaagaaaaggaaagatactatttgcattgcccttgctgatgac
tcatgcgatgaaccaaagatcaggatgaacaaggttgtgaggtcaaacctgagggttagg
cttggagacgtggtatctgtacaccagtgtcctgatgtcaagtatggaaaacgcgtgcac
atcttgcccattgatgacacaattgaaggggtcactggaaatctctttgatgcatacttg
aagccttatttcttggaagcatatcgcccagtgaggaagggtgacctcttccttgtacga
gggggaatgagaagtgtggaattcaaagttattgaaactgaccctccggagtactgcgtg
gttgctccagacactgagatcttctgtgagggagagcccgtgagaagagaggatgaggat
agattggatgaagttggttatgatgatgttggtggtgttagaaaacaaatggctcagatt
cgggagttggtggagcttcctttgagacacccacaactattcaaatcaattggtgttaaa
ccaccaaaaggaattctgctgtatggacctcctggttctgggaagactctaattgcccga
gctgttgcaaatgaaactggtgcttttttcttctgtattaatggacctgaaattatgtca
aagttggctggagagagtgaaagtaatctcagaaaagcatttgaggaagcagagaaaaat
gcaccttcaattatatttattgacgaaatagattcaattgcccccaagcgagagaaaaca
aatggagaggttgagaggagaattgtttcccaacttttgacactcatggatggactaaaa
tcccgtgcacatgttattgtcatgggggctacaaatcggcccaatagcattgaccctgct
ctgaggaggtttgggagatttgatagggaaattgatattggtgttccagatgaagttggg
cgcctagaggttcttcgtattcatactaagaacatgaagcttgctgaggatgttgatttg
gaaagaatagccaaggatacccatggttatgttggtgctgacttagcagctctttgcacc
gaggctgcgcttcaatgcatcagagaaaagatggacgtgattgacttggaagatgagaca
atagatgctgaaatactcaactcaatggcagtgactgacgaacacttcaagactgctctt
ggaataagcaacccatctgcattgcgtgaaacagttgttgaagttcctaatgttagttgg
gaagatattggtggtcttgaaaatgttaagagggagctccaggagactgttcaatatcca
gtggagcaccctgagaaatttgagaagtttggaatgtcaccatcaaagggagttctgttc
tatggccctccaggatgtgggaaaacccttctggctaaagctattgccaatgaatgccag
gcaaacttcattagtgtcaagggtcctgaattgcttacaatgtggtttggtgagagtgag
gccaatgtacgagaaatttttgacaaagctcgccaatctgctccttgtgtcttgttcttt
gatgaacttgactcaattgcaactcagagaggaagcagcgtaggagatgctgggggtgct
gctgatagagttttgaaccagcttctgacggagatggatggcatgactgcaaagaaaact
gttttcataattggggccacaaacagacccgacatcatagaccctgccctattgcgtcct
gggcgtcttgatcagttgatctatatccctcttcctgatgaggagtcacgctttcaaata
ttcaaatcttgcttgaggaaatcaccagtctccaaagatgttgacctcagagcacttgcc
aagtacacacagggtttcagtggtgctgatattacagaaatatgccagcgtgcttgcaaa
tatgccataagagagaacattgagaaagatattgagaaggagaggaggcaaaaagagaac
cctgaggctatggaggaagatgttgaggatgaggtggcagagatcaaggcagcacatttt
gaggaatccatgaaatatgcccgtcggagtgttagtgatgctgacatccggaagtatcag
gcatttgctcaaacactgcaacagtcaagagggtttggaactgaattcaggtttgctgaa
gctagtgctgggtccgatccgtttgcagcttctgctggcggagctgatgaagatgacctt
tacagttaa
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