Populus trichocarpa (black cottonwood): 7467795
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Entry
7467795 CDS
T01077
Name
(RefSeq) protein PIGMENT DEFECTIVE 338, chloroplastic isoform X1
KO
K02945
small subunit ribosomal protein S1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03010
Ribosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03010 Ribosome
7467795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03011 Ribosome [BR:
pop03011
]
7467795
Ribosome [BR:
pop03011
]
Ribosomal proteins
Mitochondria/ Chloroplast
Small subunit
7467795
Bacteria
7467795
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
S1
S1_RRP4
Motif
Other DBs
NCBI-GeneID:
7467795
NCBI-ProteinID:
XP_024450403
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All DBs
Position
2:complement(4328866..4333392)
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AA seq
528 aa
AA seq
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MQILLLQPCKSLTLFSYSLPSNTDSLVITHKRSIVHHNKCAKPPCFHSFCSLGTLKAIFL
SKNSQLWKSSLVTLCSQNDVFDDFSSTQLPEKERDDRIQVNEELELLNKPSPVIFNNGLD
VEADKESEKPGKDEALAPFLKFFKSNDSLDEVSEDERDLGVVEERSGVDNEDKEPRKINV
DYYEPKPGDFVVGVVVSGNENKLDVNIGADLLGTMLTKEVLPLYDKEMEFLLCDTKKDVK
EFMVKGKMGIVKDEVAMSPGPPGLGKPVVETGTVLFSEVLGRTLSGRPLLSTRRLFRRLA
WQRVRQIKDLNEPIEIKISEWNTGGLLTRIEGLRAFLPKAELMNRVNNFKELKENVGRQI
YVLIKRINESNNELILSEREAWEMINLREGTLLEGTVKKLFPYGAQVRIGETNRSGLLHV
SNITRTRISSVSDLLKVDEKVKVLVAKSMFPDKISLSIADLESEPGLFVSNKEKVFAEAE
EMAKKYRQKLPASSTNLKPEIPPSKNALSSDTEATLYANWKWFKFEKE
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatccttcttcttcaaccctgtaagtctctcactctcttcagctattcactacca
tccaatactgacagcttagttatcacacataagaggagcatagtccatcataacaagtgt
gcaaaacccccctgttttcactcattttgtagtctggggacacttaaagccatttttttg
tctaagaattcccaactttggaaaagttccctcgttacattatgctcccaaaatgatgtc
tttgatgatttttcgagtacccaactgcctgaaaaggaacgggatgatagaattcaagtg
aatgaggagcttgaattgttaaataagccatctccagtgatttttaataatggtttggat
gtagaagctgataaagaatctgagaaacctggtaaagatgaggccttggcgccttttttg
aagttcttcaagtctaatgattcattggatgaagtgagtgaggatgagcgtgatttaggt
gttgtagaggagagaagtggtgtggataatgaagacaaggagcctaggaagattaatgtg
gactattatgagccaaaacctggtgattttgtggttggagttgtggtttctggcaatgag
aataaacttgatgtgaatatcggggcagacttgttgggtacaatgctaacaaaggaggtg
ctgcctttgtatgacaaagagatggaatttttgttgtgcgatacaaagaaggatgtcaag
gagttcatggttaaagggaagatggggattgttaaggacgaggttgcaatgagtccaggc
cccccagggttagggaagccggttgtggagacaggaacagtgctgttttcagaggttctt
ggaaggacgcttagtggaaggccattactttctaccagacggcttttccggcggttagct
tggcaacgagtgaggcagatcaaagatctgaatgaacctattgagattaaaatttcagaa
tggaataccgggggcctacttacgagaattgagggattgcgagctttccttccaaaggct
gagttaatgaacagagtgaacaattttaaggagttgaaagaaaatgtgggtcgccaaata
tacgtgctgattaaacgaataaatgagtcaaataatgagttgatactcagtgaaagggaa
gcttgggaaatgataaacctccgagagggaacacttcttgaaggaaccgttaagaaactt
tttccatacggagcccaagtaagaataggtgaaactaaccgtagtgggctgctgcatgtc
tcaaacataactaggactcgcatttcatctgtcagtgacttgcttaaagttgacgaaaag
gttaaagtccttgttgcaaagtcaatgtttcctgacaaaatatctctcagtattgctgac
cttgaaagtgagcctggtctgttcgtatcaaacaaggagaaagtgtttgctgaggcagaa
gagatggcaaagaagtatcggcaaaagcttccagccagttcaacaaatttgaagccagaa
atcccaccaagcaagaatgccctatcttctgacactgaggcaacattatatgcaaactgg
aagtggttcaaatttgaaaaggagtga
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