Populus trichocarpa (black cottonwood): 7467806
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Entry
7467806 CDS
T01077
Name
(RefSeq) polypyrimidine tract-binding protein homolog 3 isoform X2
KO
K14948
polypyrimidine tract-binding protein 2
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7467806
Spliceosome [BR:
pop03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
7467806
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Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
TGF_beta
Motif
Other DBs
NCBI-GeneID:
7467806
NCBI-ProteinID:
XP_002302167
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All DBs
Position
2:complement(4548402..4555089)
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AA seq
436 aa
AA seq
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MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQL
YTNIQPTIRGRNVYVQFSSHQELTTMDQNTQGRGDEPNRILLVTIHHMLYPITVEVLHQV
FSPHGFVEKIVTFQKSAGFQALIQYQSRQCAVQARTSLQGRNIYDGCCQLDIQFSNLDEL
QVNYNNDRSRDFTNPNLPSEQKGRSSQPAYGDVVGYPPQMPNAAAIAAAFGGGLPPGISG
TNDRCTVLASNLNPDSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVH
FLKGAMLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLS
TLPQDITEEEIGNLVEEHGTIVNTKLFEMNGKKQALVLFETEEEATEALVCKHATSLAGS
IVRISFSQLQSIRENQ
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgactgagccttccaaagttatacatgttcgcaacgtggggcatgaaatttctgaaaat
gacttgcttcagctgttccagccattcggggttataacgaagcttgttatgcttcgtgct
aaaaatcaggctctccttcaaatgcaagatgttccttcagctatcaatgctctccaactc
tatacaaacattcagccaaccataaggggaaggaatgtttatgttcaattctcatcacat
caagaacttactacaatggatcaaaatactcaagggcgaggagacgagccaaatcgaatt
ctgttagttacaatacatcacatgctttatcctattacagtggaagtgctgcatcaagtt
ttttctccccatggatttgtggagaagattgtcacgtttcagaagtcggctggttttcaa
gcccttatccagtaccagtcacgccagtgtgctgttcaggctaggacttctcttcaggga
cgcaatatctatgatggctgctgtcagctggacattcagttttcaaacctggacgagctg
caagtgaactacaacaatgaccgctcaagggatttcactaatcctaacctgccttcagaa
cagaaaggcagatcttcccaaccagcatatggcgatgtagttggatatcctcctcagatg
cccaatgcagctgcaattgctgctgcctttggtggaggtttgcctcctggaattagcggg
acaaatgatagatgcacagttcttgcctccaatttaaatcctgatagtatagatgaggat
aagctgttcaacctgttttctctctatggaaacatagtgcggatcaagcttcttcgcaac
aagcccgaccatgcacttgttcagatgggggatggtttccaagcagagttggcagtacat
tttttgaagggtgccatgctttttggaaagcgattggaggtgaatttttcgaagcaccca
aacataactcaaggtgctgacacacacgagtacatgaactctaatctgaatcgcttcaac
cgtaatgctgcgaagaactaccgatactgctgctcaccaacaaagatgattcatctttcc
actttacctcaggacatcactgaggaggagattgggaatcttgtagaggaacacgggacc
attgtgaacaccaagctctttgagatgaatgggaagaagcaagcccttgttctgtttgaa
accgaggaggaggctactgaagcccttgtgtgcaagcatgctacttcgcttgctgggtca
atagtccggatctcgttctcccagctacagtccattagagagaaccaataa
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