Populus trichocarpa (black cottonwood): 7467871
Help
Entry
7467871 CDS
T01077
Name
(RefSeq) probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04120
Ubiquitin mediated proteolysis
pop04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
7467871
04120 Ubiquitin mediated proteolysis
7467871
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7467871
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
7467871
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
U-box type E3
7467871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
DrrA_P4M
Motif
Other DBs
NCBI-GeneID:
7467871
NCBI-ProteinID:
XP_002324089
UniProt:
B9IK34
LinkDB
All DBs
Position
17:complement(10218483..10226116)
Genome browser
AA seq
1019 aa
AA seq
DB search
MATTSNKPQRSLEEIEDIIVRKILLISLTDSSDPRIIYLEMTAAEILSEGKDLKLNRDLI
ERVLIDRLSVQNPNAEPPFNYLLGCYRRAVDELKKIANMKDKIVKSELELSIRQLKKLSV
SYCRIHLGNPELFGDDSNVVKGSGNSNVSPVLPLIFAMVDGFNSGGIQPPPGFLEELFRE
GDLDSLDPIFKGLYEDLRGNVLKVSVLGNFQQPLRALLFLVSFTVGAKSLVGHKWWIPTG
AYVNGRVIEMTSILGPFFHVSALPDNTIFKSEPDVGQQCFSDATNRRQADLLSSFTTIKT
LMNHLYDGLSEVLLALLKNSDTRESVLQYLAEVINRNATRAHIQVDPLSCASSGMFVNLS
AVMLRLSEPFLDANLSKKDKIDPNYVFQNNRLDIRGLTALHASSEEITEWLNTPRKTDVS
ALSSDEENRLLQSQEASSSGNSGEKAKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDI
SRCEDTLSTFKALQKQTPSPQLQLDIDRLEKEIELYSQEKLCYEAQILRDGALIQHALSF
YRLMLVWLVNLVGGFKMPLPLTCPKEFASMPEHFVEDAMELLIFASRIPKALDGVLLDDF
MNFIIMFMASPTYIRNPYLRAKMVEVLNCWMPRRSGSSATASLFEGHHLSLEYLVRNLLK
LYVDIEFTGSHTQFFDKFNIRHNIAELLEYLWQVPSHRNIWMKIAKEEEKGVYLKFLNFL
INDSIYLLDESLNKILEIKGLEAEMSNTTEWERRPAQERQERTRLFHSQENIIRIDMKLA
NEDVSMLTFTSEQITAPFLLPEMVDRVATMLNYFLLQLVGPQRRSLTLKDPEKYEFRPKQ
LLKQIVHIYVHLARGDTENIFPAAILKDGRSYNEQLFTAAADVLRRIGEDGRVVQEFIEL
GTKTKVAASEAMDAEVTLGEVPEEFLDPIQCTLMKDPVILPSSRTTVDRPVILRHLLSDN
TDPFNRSHLTVDMLISNTELKARIDEYIRSQELKRHGEDFSLQRAKETIQTTTEEMLID
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaacctcaaataaacctcaaagatctctcgaagaaatagaggacataatcgtc
cgcaaaatcctcttaatctctctcaccgattcctctgatcctcgaattatctacttagaa
atgactgctgctgagattctcagtgaaggcaaagacttgaaactcaaccgcgacttgatc
gaacgtgtcttaatcgatcgattgtctgtccaaaaccctaacgcggaacctcctttcaat
tacctcttaggttgttaccgccgcgcggttgatgagttgaagaaaatcgcgaatatgaag
gacaaaattgtcaaatcagagctggaattgtcgatcaggcaactgaagaagttgtcggtt
tcttattgtaggattcatttgggaaatcctgagttgtttggggatgattcgaatgttgtt
aaagggagtgggaactcgaatgtttcgccggttctgccgttgatttttgcgatggttgat
gggtttaatagtggtggaattcagcctccgccggggtttttggaggagctgtttagagaa
ggggatcttgatagtttggatccgattttcaagggtttatatgaggacttgagaggaaat
gttttaaaggtttctgttttagggaattttcaacaaccattgagggctttattgttcttg
gttagttttaccgttggtgctaaatcacttgttggtcataagtggtggattccgacaggg
gcttatgtaaatgggagagttatagaaatgacaagtattttgggtcccttttttcatgtg
agtgcattgccagataataccatttttaagagcgagccggatgttgggcagcagtgtttc
tctgatgcaacaaaccgtcgacaggctgatttgttatcttcatttactacaattaagact
ctaatgaatcatttatatgatggtttatcagaagtgcttcttgctctacttaaaaatagt
gatactcgtgagagtgttcttcagtatcttgctgaggtgataaatagaaatgcaacaaga
gctcatatacaagttgatcctttatcttgtgcaagttctggcatgtttgtcaatctaagt
gctgtcatgcttcggctctctgaaccattcctagatgcaaatttgtcgaaaaaagacaaa
attgatccaaattatgtgtttcaaaataaccgtttggatataagagggttgacagctctg
catgcatcatcagaagaaattactgaatggcttaatactcctcggaaaactgatgtctct
gcactatctagtgacgaagaaaatcgcttgttacaatctcaagaagcctccagttctggt
aacagtggtgaaaaggctaaatactcatttatttgtgagtgcttctttatgactgcaagg
gtgctcaacttgggtctgttgaaagcattttctgactttaagcatctagttcaggacatt
tctagatgtgaagatacactctccacatttaaagccttgcaaaagcagacgccatctccg
cagctgcagctggatatcgatcgtcttgagaaagaaatagagttgtattcacaggaaaag
ctttgttatgaagctcagatattaagggatggagcacttattcagcatgcactttctttc
taccggttgatgttggtttggttggttaacttggttggtggatttaaaatgcctctgcca
ttaacttgcccaaaggaatttgcctcgatgccggagcattttgttgaagatgccatggaa
ttacttatctttgcttctcggattccaaaagctttggacggagtcttactagatgatttt
atgaatttcattatcatgttcatggcaagtccaacatatattagaaatccttatttaaga
gcaaagatggttgaagtattgaactgctggatgccacggagaagtggttcatctgctaca
gcttctctatttgaagggcaccatttgtcgcttgagtatcttgtgaggaacctcttgaag
ctttatgttgacattgaattcacaggttctcacacacagttctttgacaagttcaacata
cggcataatattgctgaacttcttgaatacctgtggcaggtccctagtcatcgtaacatt
tggatgaagatcgcaaaggaagaggaaaagggtgtctatctgaaatttttgaacttcctg
atcaacgacagcatctatcttcttgatgaaagtctgaacaaaattcttgaaatcaaaggg
ttagaagctgagatgtccaacaccacagaatgggagcgcagaccagctcaagagagacag
gagagaacccgccttttccattcccaagagaatatcatccgcattgatatgaagttggca
aatgaagatgtgagcatgctgacatttacatcagaacaaattacagcacctttcctgctt
cctgagatggttgacagagtggccaccatgctcaattacttcttgttacaacttgtgggt
ccccaaaggagatctctcaccctgaaagaccctgaaaagtatgaattccgcccaaaacag
ttgcttaagcagattgtccatatatatgttcatctggcgaggggtgatactgaaaacata
ttcccagctgccatcttgaaggatgggcgatcatacaatgagcagttatttactgctgct
gccgatgtccttcggagaattggtgaagatggtagagttgtccaggaatttattgagctc
ggtacaaaaaccaaggttgcagcttctgaggcaatggatgctgaagttacccttggagag
gtaccagaagaattccttgatccaattcagtgcactttgatgaaggatccggtgattttg
ccgtcttcaagaaccacagttgacaggcctgtcattctaaggcatcttctgagtgacaat
acggatcccttcaatcgatcacatcttactgtggacatgctgatttcaaacactgagttg
aaggcaagaatagatgagtacattaggtctcaagaattaaagaggcatggggaagacttc
agcttgcaaagggccaaagaaacaatccaaaccacaactgaagaaatgttgattgattag
DBGET
integrated database retrieval system
