Populus trichocarpa (black cottonwood): 7467917
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Entry
7467917 CDS
T01077
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic isoform X1
KO
K11975
E3 ubiquitin-protein ligase RNF144 [EC:
2.3.2.31
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7467917
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
7467917
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
7467917
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
IBR
IBR_1
zf-C3HC4_2
zf-C3HC4
zf-RING_5
Cnd1
Motif
Other DBs
NCBI-GeneID:
7467917
NCBI-ProteinID:
XP_002324718
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All DBs
Position
18:7663774..7667406
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AA seq
403 aa
AA seq
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MKPKVLEIPESKPKVEMPHIVIVDDHYHDQFLSTPLSNKGTTEDDAISVEQYSEDRDLNV
AVMSSLNSSKEANFSGSKPEVVQIVNLDYYHDRFLGMPVSNKGTGENNAISVEEYGEDRD
LNIAIMASLKSNKEANFIDPSQDYFYYYNDEDDDIKVLDFLPEVIPSRKQKEPTFIESVA
EKGQSSNSQIDPDFVCQICVEPTILKNSFLIKGCTHAYCTECMVKYVSSKLQENITKICC
PVPDCKGALEPEDCRSVLPENVFDRWGNALCEAVILGSQKFYCPFKDCSAMLIDDGEEVV
RESECPNCWRMFCAQCKVPWHSQISCEEYKMLHKDERERDDILLMNLAKNKNWRRCPKCR
IFVEKIEGCRYMKCRCGTQFCYSCGSTDLNPVTHYCYKCKGIW
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgaagccaaaagttttggaaataccagagtcgaagccaaaagtggagatgccccatatt
gtaatcgtggatgatcattatcacgaccagtttctttccacacccttatcaaacaaaggc
accacagaggacgatgcaatctctgttgaacagtacagtgaagatcgtgaccttaatgtt
gccgtcatgtcttctctcaattccagcaaagaagcaaacttttcggggtccaaaccagag
gtggttcagattgtaaaccttgattattatcatgataggtttcttggcatgcccgtatca
aacaaaggcaccggagagaataatgcgatctctgttgaagagtacggtgaagatagagac
ctcaatattgctatcatggcttctctcaagtccaataaagaagcaaactttattgatccc
tctcaagattatttctactactataatgatgaggatgatgatataaaggtactcgatttc
ttgcctgaagtcattccttctaggaaacaaaaagaacccacttttatagaatcagtggct
gaaaagggtcaatcttcaaattctcaaattgacccagattttgtttgtcaaatctgtgtc
gaacccacgattttaaagaattcatttttaatcaagggttgcactcatgcttactgtacc
gaatgcatggtcaagtatgtgtcctcgaaattacaggaaaacataaccaaaatctgctgt
cctgttccagattgtaaaggcgcattagagcctgaggattgccgttcagttttacctgaa
aatgtgtttgataggtggggtaatgctctgtgtgaggctgtgattcttggctctcaaaag
ttttattgtccttttaaagattgttctgcaatgttgattgatgatggagaggaggttgtc
agggaatctgaatgccctaattgttggagaatgttctgtgcacaatgtaaggttccttgg
cattcacagattagctgcgaagagtataaaatgctgcacaaggatgaaagagagagggat
gatatactgttgatgaatctagcaaagaacaagaactggaggaggtgcccaaaatgcagg
atatttgtcgagaagatagaaggttgtagatatatgaaatgcaggtgtggaactcaattc
tgttacagctgcggatctactgatttaaatccagtaacacattactgttataaatgtaag
ggaatttggtag
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