Populus trichocarpa (black cottonwood): 7467973
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Entry
7467973 CDS
T01077
Name
(RefSeq) RNA-binding protein Y14
KO
K12876
RNA-binding protein 8A
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
pop03015
mRNA surveillance pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7467973
09122 Translation
03013 Nucleocytoplasmic transport
7467973
03015 mRNA surveillance pathway
7467973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7467973
03041 Spliceosome [BR:
pop03041
]
7467973
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
7467973
Spliceosome [BR:
pop03041
]
Complex C
Other components
EJC/TREX
7467973
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
Motif
Other DBs
NCBI-GeneID:
7467973
NCBI-ProteinID:
XP_002299789
UniProt:
A9PCB0
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All DBs
Position
1:27156838..27160250
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AA seq
205 aa
AA seq
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MANTEAEAVDFEPEEDDLMDEDGAADADASSSPRAPLPKLKSAITGGSASSSLSAPKKTK
GRGFREEVDAERQSRLSGRGFDSLGSDGGPGPQRSVEGWIILVSGVHEEAQDDHLQEAFG
EFGEIKNLHLNLDRRTGFVKGYALIEYEKFEQAENAIASMNGGTLLEQIIYVDWAFSNGP
SNWASRRKNMRPERTNRSRSPRRRY
NT seq
618 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacacggaggccgaagcggtggattttgagccagaggaagatgatttgatggac
gaagacggtgccgccgacgctgacgcctcctcctcacctcgtgctccactccccaagtta
aagtcagctattactggaggcagcgcgtcttcttcactctccgctcctaaaaagactaaa
ggccgtgggtttagagaagaggttgatgctgagagacagagccgcctctctggtcgtgga
tttgattccctcggttctgatggtgggcctggcccccagcgatctgttgaaggatggata
attttggtgagtggagtgcatgaggaagcacaagatgatcatctgcaagaagctttcggt
gaatttggggaaataaaaaatttgcatttgaatcttgatcgccgcactggttttgttaag
ggctacgcgctgatagaatatgagaagtttgagcaagcagagaatgcaatagcttcaatg
aatgggggaacattgctcgaacagattatctatgttgattgggccttcagcaatggcccc
agcaattgggcctccagaagaaagaacatgagacctgaacgaacgaatcgctcaaggagt
cctaggaggagatattaa
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