Populus trichocarpa (black cottonwood): 7467984
Help
Entry
7467984 CDS
T01077
Name
(RefSeq) pseudouridine-5'-phosphate glycosidase isoform X1
KO
K16329
pseudouridylate synthase [EC:
4.2.1.70
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00240
Pyrimidine metabolism
pop01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
7467984
Enzymes [BR:
pop01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.70 pseudouridylate synthase
7467984
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Indigoidine_A
Beta-AFase-like_GH127_cat
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
7467984
NCBI-ProteinID:
XP_052305955
LinkDB
All DBs
Position
1:27020002..27025030
Genome browser
AA seq
341 aa
AA seq
DB search
MESSSSALSRLSNLHRHLHPPQSNSKIQEGLLKLSPEVAEALSSGHPVVALESTIISHGM
PYPKNLKTAKEVEAIVRENGAVPATVAILDGVPCIGLSTGELERLATLGTKAQKTARRDI
AHVVANRGNGATTVSATMFFASMVGIHVFVTGGIGGVHRHGEQTMDISSDLTELGRTPVA
VISAGVKSILDIPRTLEYLETQGVCVAAYKTNEFPAFFTERSGCKVHCRVDTPDDCARLI
DANLKLKLGSGILIAVPIPKEHSASGGLIESSIQIALREARDKNITGNAETPFLLAKVNE
LTGGASLASNIALVKNNALVGAKIAVALAQLKEHSNRGDAE
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atggagtcttcgtcatcagctctgtcaagattatcgaatttacataggcaccttcaccct
ccacaatcaaactccaagattcaagaagggttgctgaagctatctccagaggttgctgaa
gctctttcatctgggcatcctgttgttgctttagaatccactattatttctcacggtatg
ccttatcctaaaaacttgaaaacagcgaaggaggtggaggcaattgtgagggagaatgga
gcagttcctgccaccgttgccattttggatggtgtaccctgcataggtttgagtacagga
gagctagagagacttgctactcttggaactaaagcacaaaagactgctcggagagacatt
gcacatgttgtggctaacagagggaatggtgctactactgtttccgcaaccatgtttttt
gcttccatggttggtatccatgttttcgtaactgggggaattgggggagtacatagacat
ggtgaacaaacaatggatatatcttctgatcttacagagcttggcaggactccagttgca
gtaatctctgctggagtaaaatctatattagatattcccagaaccctagaatatttggag
actcagggcgtttgtgttgctgcttataagaccaatgagtttccggcatttttcacagag
agaagtggctgcaaggtacattgtcgtgttgacaccccagatgactgtgctcggctaata
gatgcgaacttgaaacttaagcttggatctggaattctaattgcagttccaatccccaag
gaacactcagcttctggaggcttaatcgagtcttctatacaaattgcccttagagaagct
agggacaagaatataactggcaatgctgaaactccattcttgcttgcaaaagtgaacgaa
ctcactggaggagcctcactggcatctaacattgcacttgtgaagaataatgcacttgtt
ggtgctaagattgcagtagcccttgctcagctaaaagaacattctaatagaggagatgct
gagtga
DBGET
integrated database retrieval system
