Populus trichocarpa (black cottonwood): 7468130
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Entry
7468130 CDS
T01077
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7468130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7468130
03009 Ribosome biogenesis [BR:
pop03009
]
7468130
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
7468130
Spliceosome [BR:
pop03041
]
Complex A
U1 snRNP components
U1 related factors
7468130
Complex B
7468130
Ribosome biogenesis [BR:
pop03009
]
Eukaryotic type
Pre-60S particles
Helicases
7468130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
Motif
Other DBs
NCBI-GeneID:
7468130
NCBI-ProteinID:
XP_024465456
LinkDB
All DBs
Position
10:complement(16194096..16201079)
Genome browser
AA seq
1163 aa
AA seq
DB search
MATAEPASATVGPRYAPEDPTLPKPWTGLIDGSTGLLYYWNPETNITQYEKPPSVPPQMP
PALPPNASTPKLAQIPMAHSSQPNGLVAQAAQQTMQASQQQGQQISQLHQQYGQVTSQQQ
GPQVVQVSNQQGAPQQGSQLAQAIQQPGQLRSMQHPGQHLLSHAGQQMPQQGGQQVPQQV
GQYIMQHQSLQMPQPQGHQYAYQQPMQYMTYQQNVLPQGQQSSQQQAHLSAQGLQFPNQH
EYKAVLPKREEVEFQQGNQTGFSPARFQQTGGSSSQNLSSAGSNPVCMPHSGVQLGQAQQ
FGSSSVNIQHPPSMVQMQQIGTDFHQQHGPRFQNHMGPSVMHNQQSNLPPAGLNMGYENN
AHGRSGNDHYINAKVEGPVMSPHQPEFTAMSRARKQQDSRTGSVPFQNVGPGHGGGFNAD
GHPNHNMYSHATSGPPFPNNALMRPSFIETADISNLSPAEVYRQEHEVSATGDNVPAPFM
TFEATGFPSEILRDIHSAGFVSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI
LLQQRRNNAQNGPTVLVLAPTRELATQIQDEVMKFGRSSRVSCTCLYGGAPKIPQLKELE
RGADIVVATPGRLNDILEMKRIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPQRQT
LMFTATWPKEVRKIASDLLVHPVQVNIGSVDVLAANKSITQYVEVVPQMEKDRRLEQILR
TQERGSKAIIFCSTKRLCDQLARSIGRNFGAAAIHGDKSQGERDWALNQFRSGKSPILVA
TDVAARGLDIKDIRIVINYDFPSGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKYAADLV
KLLEGANQHVPVEVREMALRGGPSFGKDRGGLNRFDAGRGGGRWASGGRGGMRDGGFGGR
GGMRDGGFGGRGGMRENSFGGRGGMRENSFGGRGGMRDGNFGGRGGRNDLFSGRENRGRG
FGGSGGGHVGWGRNDRGPNDRHSYMDGRGRGHGRFDGRRDMTDKSRGRSFSRSPDRARTR
GYSRSRSRSRSRSRSWTRSRSRSPRDSRSRSPRHSRSRSRSPRRSRSRSGIRSHSPQHAS
SHSLSPRRSPDYDRFERPRERNIDEKDMTVPELKASEQEMSPMSPGTHGNAFSGAELLPA
TGSAEPVQQEATGDPGLPSVAEA
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggctactgctgaaccagcttcagctaccgttgggccacggtatgctccagaagaccca
acccttcccaaaccatggacaggactgattgatggaagtacaggtcttttatattactgg
aatcctgaaacaaacatcacacagtatgaaaagcccccatctgtgccgccacagatgcct
cctgctctacctcctaatgcttctacgcctaagttggcccagatacccatggcacactca
tcgcaaccaaatggcttggtggctcaagctgcacaacagactatgcaagcatcacagcaa
caagggcaacagattagccagttgcatcaacaatatggacaagtaacttcacaacagcag
ggtccccaagtagtgcaggtttctaaccagcagggtgcaccacagcaaggttcacagttg
gcacaggccattcaacaaccggggcagttgagatcaatgcagcatccaggtcagcatctg
ctgtcccatgcagggcagcaaatgcctcaacaaggaggtcagcaggtgccccagcaggta
ggacagtacattatgcagcatcaaagcttgcaaatgccacaaccacaaggacatcagtat
gcatatcagcagccaatgcagtacatgacatatcagcaaaacgtgcttccacaaggccaa
caaagctcgcagcagcaggcacatcttagtgcacaagggttgcaatttcctaatcaacat
gaatacaaggcagtgttgccgaagagagaggaagttgagttccagcaaggaaatcaaact
gggttttctccagctcggtttcaacagactggtggatcatcctctcaaaacctgtcttct
gctggaagcaatccggtttgcatgccgcattctggtgttcagttgggtcaggctcagcag
tttggtagctcttctgttaatattcaacatcctccttccatggttcagatgcagcaaatt
gggactgattttcatcagcagcatggtcctaggtttcaaaatcatatgggtccctcagtg
atgcacaatcagcagtctaatctgccccctgctgggttaaatatgggttatgagaacaat
gcacatggtaggtctggcaatgatcattatattaatgctaaagtggaagggcctgtgatg
agtccccatcagcctgagtttacagctatgtctagggcaagaaagcagcaggattcaagg
acagggagcgtcccatttcagaatgtcgggcctggtcatggtggcggatttaatgcagat
gggcatcccaaccataatatgtatagtcatgcaaccagtggtccaccttttccaaacaat
gcattgatgagaccatctttcatcgaaactgcagacatttctaacctctcgcctgctgaa
gtttaccgccaggagcatgaagtctcagctacgggtgacaatgttcctgccccattcatg
acttttgaagccactggtttcccttcggagatattacgagatatacattctgctggattc
gtatctccgacaccaattcaggcacaaacatggccaattgcgctacaaagtagggatata
gtggccattgccaaaactggttccggtaaaacattgggttacttgattcctgccttcatt
cttcttcaacagcgacgaaataatgctcagaatggacctacagtgttagtcttggctcca
accagggagcttgccacgcaaatacaagatgaggtgatgaaatttggtcgatcttctagg
gtctcttgcacgtgcttgtatggtggagctccaaagattcctcaactgaaagaattagaa
aggggagcagatatagttgtggcaacacctggtcgactcaatgacatccttgaaatgaaa
aggattgactttaggcaagtttcactccttgtgcttgatgaggctgatcgaatgcttgac
atgggatttgagcctcagatccgtaagattgtgaacgaaatacctcctcaaaggcaaaca
cttatgttcactgcaacctggccaaaagaagtgaggaaaatagcaagtgatcttcttgtt
catcctgtccaggtgaacattggcagtgttgatgtgcttgctgccaacaagtcaatcaca
cagtatgttgaagtggtcccacaaatggaaaaggatcggcgcttggagcaaatccttaga
acacaagagagaggttccaaggctatcattttctgctctacaaagagattgtgtgaccag
cttgcacggagtattggacggaactttggagccgctgcaatccatggagacaagtctcaa
ggtgagagagactgggctttaaaccaattccggagtggaaaatctccaattttagttgcc
actgacgttgctgcccgtggtcttgatatcaaagacataaggattgttatcaactacgac
ttcccctctgggattgaggactatgttcaccgaattggtagaactgggagggctggtgca
actggggtgtcatacacctttttctctgagcaggactggaaatatgcagctgacctggtt
aaactgctggagggagctaatcagcatgtgcccgtagaggtgcgagagatggcgttgcgt
ggtggacctagctttgggaaggatcgaggagggttgaaccgttttgatgctggcaggggt
ggtgggcggtgggcttctggtggccgtggtgggatgagagatggtggctttggtggtcgt
ggtgggatgagagatggtggctttggtggccgtggtgggatgcgggaaaacagctttggg
ggacgtggtgggatgagggaaaacagctttgggggacgtggtgggatgagggatgggaac
tttgggggacgtggtgggagaaacgacttgttttctgggcgggaaaacaggggaaggggt
tttggtggctctggtggtggacatgtaggttggggtaggaatgatcgaggcccaaatgat
cgtcatagttacatggatggccgtggacgtggtcatggaagattcgatggtagaagggat
atgactgataagagtaggggcagaagtttcagtcgaagccctgatagggctcgaacacgg
ggttatagccggagccggagccggagccgtagtaggagtcggagctggaccagaagccgc
agccgcagccctcgagacagccgcagccgcagcccccgacacagccgcagccgcagccgc
agcccccgacgcagccgcagccgcagcggcatccgcagccatagtcctcaacatgccagt
agtcacagccttagccctcgaaggagccctgactatgatagatttgaaaggcctcgagaa
agaaacattgatgagaaggatatgacagttccagaattgaaggcttcagaacaagaaatg
tctccaatgtcgccgggcacacatggtaatgcattttctggagcagagctgctgccagcc
actgggagtgctgagccagtgcaacaggaggctacaggagatccagggcttccttcagtt
gctgaagcttga
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integrated database retrieval system
