Populus trichocarpa (black cottonwood): 7468474
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Entry
7468474 CDS
T01077
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pop04812
]
7468474
Cytoskeleton proteins [BR:
pop04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
7468474
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Katanin_con80
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_SPT8
WDR90_beta-prop_4th
eIF2A
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_VPS8
Beta-prop_IP5PC_F
Beta-prop_DCAF12
Beta-prop_NWD2_C
PROPPIN
Beta-prop_RIG_1st
PAN2_N
Motif
Other DBs
NCBI-GeneID:
7468474
NCBI-ProteinID:
XP_024466863
LinkDB
All DBs
Position
10:22610265..22619359
Genome browser
AA seq
753 aa
AA seq
DB search
MTTKRAYKLQEFVAHSSSVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTS
GIDSVSFDSSEVLVAAGAASGTVKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS
LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHD
FKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETTGVRCLTFNSDGR
TLLCGLHESLKVFSWEPIGCPDSVDVGWSKLSDLNVHEGKLLGCSYNQSCVGVWVVDLVK
ETKSLERLSDFQNSDHGKEFSKESKVLPTTGSAPGTPQRASLNTGLKATITGPITVPSTA
APKRSSMKVYSAVNVPVLNKADVIPVIVPRTNSRSEQVAGSRKEIDIAARTMPFSLHLKT
TDFRKFSNSREDMDQPTTSIQPAETTGCKATELISVTDRNISPAVKGSIHGLTTAEQSFG
SGNYKSDSTLEPPTSYQKENCETRGHKINRDAPSIESQKGGRMRSLMINWEKRGSSPSYE
GPTSGISAGTSSVVNVLPLNMLKFKQRGRAPSIEKEMVSASDEDVIADLMEQHDQFVSSM
QSRSAKLQVVHRYWERNDVKGAIGAMEKMADHAVLADVISIVADKIDTVTLDICTCLLPL
LTNLLESDMDRHSSISLDMLLKLVRTFGSMIYSTLSASTSVGVDIEAEQRLERCNICFVE
LEKVKRCLLTLTRKGGSVAKYAQELNLALQEVS
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgactactaaacgcgcctacaaactccaggaatttgtggctcattcttcgagtgtcaat
tgcctcaagattggcaggaaatcatccagggttcttgtgactggaggagaagatcacaag
gttaatctctgggctattggtaagcccaatgctatactgagtttgtccggacatacaagc
gggattgattcagtaagctttgattcttcagaagtcctagtagctgctggagctgcaagc
ggtacggtcaagctttgggatttagaggaggcaaaaattgttcgcacactcactggtcac
agatccaattgcatatctgttgactttcacccttttggagagttctttgcatctggttcc
ctggacacaaatcttaagatatgggatattagaaagaagggctgtattcacacatacaag
ggccacactcgaggggtcaatgcaatcagatttaccccagatggtcgctgggttgtatcc
ggtggagaggacaatactgttaagctgtgggatttgactgctggaaagctattgcacgat
ttcaagtgccatgagggtcagattcagtgcatagattttcatccccacgagtttcttctt
gcaacaggttctgctgacaggacagtaaaattttgggatcttgaaacctttgagctaata
ggttctgctgggccagagacaactggagtgcgttgtttgacctttaattctgatgggagg
actctactctgtggattgcatgaaagtttaaaagttttctcctgggaaccaataggatgc
cctgattctgtggatgtgggatggtccaagttgtcagatctcaatgttcatgaaggaaag
cttcttggctgctcatacaatcagagttgtgtaggagtgtgggttgtagatttagtaaag
gaaacaaaatctcttgaaaggttgtcagattttcaaaattcagatcacgggaaggagttt
tctaaagaatcaaaggttttgccgacgacgggaagtgcacctggtactcctcaaagagcg
agcttaaacactgggttgaaggcaaccattaccggtccaataacagttcctagcacagca
gccccaaagaggagttctatgaaggtctattcagctgttaatgttccagtcttgaacaag
gcagatgtaattcctgtaattgtccccagaaccaactcaagatcagagcaagttgctggc
tccagaaaagaaattgatattgccgcaaggacaatgccattttctttgcatttgaagaca
actgatttccggaaattttcaaatagcagagaggacatggaccagccaactacctctatc
cagcctgctgagaccacaggttgcaaggcaacagaactgatcagtgtcactgataggaat
atttctcctgcagttaaaggttcgattcatggactaacaactgctgaacaatcttttgga
tctggaaactataaatcagattcaacattggagccacccactagttatcagaaagaaaac
tgtgagactcgaggacataaaataaacagagatgcaccctccattgaaagccagaaagga
ggaagaatgcgttcacttatgataaactgggagaaaaggggaagctctcctagctatgag
ggacctacttctggcatttctgccgggacatcatctgtggtgaatgtgctccctcttaat
atgttgaagtttaaacagagaggacgtgccccatccatcgaaaaggaaatggtttctgct
agtgacgaggatgttattgcagacttaatggaacagcatgatcaatttgtcagctctatg
cagtctcgttctgccaagttacaggttgtccatagatattgggagagaaatgatgtaaag
ggggccattggtgcaatggagaagatggctgaccacgccgtccttgctgatgtaatcagt
attgtggcagataaaattgacactgtcacattggatatatgcacatgtctcctgcctctt
cttactaacctgcttgaaagtgacatggataggcactcaagcatttcactggacatgctg
ctgaagctggtcaggacatttggttcaatgatctattcgactctatcagcatcaacatct
gttggtgtggatattgaagcagagcaaaggttggaacgttgcaatatctgctttgtagag
cttgagaaagtcaagcgttgcctgcttacccttacaaggaaaggtggttcagttgcgaag
tacgcccaggagctaaatctagctcttcaagaagtatcatga
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