KEGG   Populus trichocarpa (black cottonwood): 7468474
Entry
7468474           CDS       T01077                                 
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 isoform X1
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:pop04812]
    7468474
Cytoskeleton proteins [BR:pop04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     7468474
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Katanin_con80 Beta-prop_WDR3_1st Beta-prop_IFT122_1st Beta-prop_THOC3 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML_2 EIF3I WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd DSE1_N Beta-prop_EML ANAPC4_WD40 Beta-prop_SCAP Beta-prop_TEP1_C Beta-prop_NOL10_N WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_DCAF4 NBCH_WD40 Beta-prop_EIPR1 ASA1 Beta-prop_IFT140_1st Beta-prop_VPS8 Beta-prop_WDR41 Beta-prop_SPT8 WDR90_beta-prop_4th Beta-prop_Aladin eIF2A PAC11 CFAP251_N Beta-prop_Vps41 Beta-prop_HPS5 WD40_RFWD3 TRM82_WD Beta-prop_WDR19_1st Beta-prop_IP5PC_F Beta-prop_DCAF12 Beta-prop_NWD2_C PROPPIN Beta-prop_RIG_1st Beta-prop_ACSF4 PAN2_N
Other DBs
NCBI-GeneID: 7468474
NCBI-ProteinID: XP_024466863
LinkDB
Position
10:22610265..22619359
AA seq 753 aa
MTTKRAYKLQEFVAHSSSVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTS
GIDSVSFDSSEVLVAAGAASGTVKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS
LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHD
FKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETTGVRCLTFNSDGR
TLLCGLHESLKVFSWEPIGCPDSVDVGWSKLSDLNVHEGKLLGCSYNQSCVGVWVVDLVK
ETKSLERLSDFQNSDHGKEFSKESKVLPTTGSAPGTPQRASLNTGLKATITGPITVPSTA
APKRSSMKVYSAVNVPVLNKADVIPVIVPRTNSRSEQVAGSRKEIDIAARTMPFSLHLKT
TDFRKFSNSREDMDQPTTSIQPAETTGCKATELISVTDRNISPAVKGSIHGLTTAEQSFG
SGNYKSDSTLEPPTSYQKENCETRGHKINRDAPSIESQKGGRMRSLMINWEKRGSSPSYE
GPTSGISAGTSSVVNVLPLNMLKFKQRGRAPSIEKEMVSASDEDVIADLMEQHDQFVSSM
QSRSAKLQVVHRYWERNDVKGAIGAMEKMADHAVLADVISIVADKIDTVTLDICTCLLPL
LTNLLESDMDRHSSISLDMLLKLVRTFGSMIYSTLSASTSVGVDIEAEQRLERCNICFVE
LEKVKRCLLTLTRKGGSVAKYAQELNLALQEVS
NT seq 2262 nt   +upstreamnt  +downstreamnt
atgactactaaacgcgcctacaaactccaggaatttgtggctcattcttcgagtgtcaat
tgcctcaagattggcaggaaatcatccagggttcttgtgactggaggagaagatcacaag
gttaatctctgggctattggtaagcccaatgctatactgagtttgtccggacatacaagc
gggattgattcagtaagctttgattcttcagaagtcctagtagctgctggagctgcaagc
ggtacggtcaagctttgggatttagaggaggcaaaaattgttcgcacactcactggtcac
agatccaattgcatatctgttgactttcacccttttggagagttctttgcatctggttcc
ctggacacaaatcttaagatatgggatattagaaagaagggctgtattcacacatacaag
ggccacactcgaggggtcaatgcaatcagatttaccccagatggtcgctgggttgtatcc
ggtggagaggacaatactgttaagctgtgggatttgactgctggaaagctattgcacgat
ttcaagtgccatgagggtcagattcagtgcatagattttcatccccacgagtttcttctt
gcaacaggttctgctgacaggacagtaaaattttgggatcttgaaacctttgagctaata
ggttctgctgggccagagacaactggagtgcgttgtttgacctttaattctgatgggagg
actctactctgtggattgcatgaaagtttaaaagttttctcctgggaaccaataggatgc
cctgattctgtggatgtgggatggtccaagttgtcagatctcaatgttcatgaaggaaag
cttcttggctgctcatacaatcagagttgtgtaggagtgtgggttgtagatttagtaaag
gaaacaaaatctcttgaaaggttgtcagattttcaaaattcagatcacgggaaggagttt
tctaaagaatcaaaggttttgccgacgacgggaagtgcacctggtactcctcaaagagcg
agcttaaacactgggttgaaggcaaccattaccggtccaataacagttcctagcacagca
gccccaaagaggagttctatgaaggtctattcagctgttaatgttccagtcttgaacaag
gcagatgtaattcctgtaattgtccccagaaccaactcaagatcagagcaagttgctggc
tccagaaaagaaattgatattgccgcaaggacaatgccattttctttgcatttgaagaca
actgatttccggaaattttcaaatagcagagaggacatggaccagccaactacctctatc
cagcctgctgagaccacaggttgcaaggcaacagaactgatcagtgtcactgataggaat
atttctcctgcagttaaaggttcgattcatggactaacaactgctgaacaatcttttgga
tctggaaactataaatcagattcaacattggagccacccactagttatcagaaagaaaac
tgtgagactcgaggacataaaataaacagagatgcaccctccattgaaagccagaaagga
ggaagaatgcgttcacttatgataaactgggagaaaaggggaagctctcctagctatgag
ggacctacttctggcatttctgccgggacatcatctgtggtgaatgtgctccctcttaat
atgttgaagtttaaacagagaggacgtgccccatccatcgaaaaggaaatggtttctgct
agtgacgaggatgttattgcagacttaatggaacagcatgatcaatttgtcagctctatg
cagtctcgttctgccaagttacaggttgtccatagatattgggagagaaatgatgtaaag
ggggccattggtgcaatggagaagatggctgaccacgccgtccttgctgatgtaatcagt
attgtggcagataaaattgacactgtcacattggatatatgcacatgtctcctgcctctt
cttactaacctgcttgaaagtgacatggataggcactcaagcatttcactggacatgctg
ctgaagctggtcaggacatttggttcaatgatctattcgactctatcagcatcaacatct
gttggtgtggatattgaagcagagcaaaggttggaacgttgcaatatctgctttgtagag
cttgagaaagtcaagcgttgcctgcttacccttacaaggaaaggtggttcagttgcgaag
tacgcccaggagctaaatctagctcttcaagaagtatcatga

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